Xanthomonas axonopodis Xac29-1: XAC29_18385
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Entry
XAC29_18385 CDS
T02500
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
xao
Xanthomonas axonopodis Xac29-1
Pathway
xao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XAC29_18385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xao03019
]
XAC29_18385
Enzymes [BR:
xao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
XAC29_18385
Messenger RNA biogenesis [BR:
xao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XAC29_18385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25_NTPase-like
P-loop_SecA
AAA_22
HEM4
Motif
Other DBs
NCBI-ProteinID:
AGH79082
LinkDB
All DBs
Position
4290376..4291758
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AA seq
460 aa
AA seq
DB search
MSFESLGLAPFLLRALAEQGYETPTPIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLL
QHLGTAPQTVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD
ALRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQ
DRQTLLFSATFEENIKQLALEFMRNPVQIQVTPSNTVAESITHRVHPVDGARKRDLLLHL
LAQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVL
VATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQ
IVRMLGRDVEIRDVPGYEPQTPIRWGNSAPGRAEQPGGDRAPRKSHARRPHGDAPRQAHA
HAGPKKPGGQRSNGPRQANTGAGAGRRDGGRGGQRPSGTR
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgaatccctgggccttgcgcccttcctgttgcgcgcgctggccgagcagggc
tacgaaacccccaccccgatccagcagcaggcgatcccgctggtcctggccggtcacgac
ctgctggccggcgcgcagaccggcaccggcaagaccgctgccttcggcctgccgctgttg
cagcacctgggcaccgcgccgcagaccgtcaacggcccgcgcaagccgcgcgcgctgatc
ctgacccccacccgcgaactggccacccaggtgcacgacagcctgcgcggctacagcaag
tacctgcgcatccccagcgcggtgatctatggcggcgtgggcatgggcaaccagctcgat
gcgctgcgtcgtggcgtggacctgctgatcgcctgcccgggccgcctgatcgaccatatc
gaacgtcgcagcgtggacctgtccggcatcgaagtgctgatcctggacgaagccgaccgc
atgctcgacatgggcttcttgccctccatcaagcgcatcctgactaagttgccgcgccag
gatcgtcaaacgctgctgttctcggcgaccttcgaagagaacatcaagcagctggcgctg
gagttcatgcgcaacccggtgcagatccaggtcaccccgagcaataccgtggccgagagc
atcacccaccgcgtgcacccggtcgacggcgcgcgcaagcgcgatctgctgctgcatctg
ctggcgcaggacagccgcgagcagaccctggtcttcgcccgtaccaagcacggcagcgac
aagctggcgctgttcctggagaagtccggcatcaagaccgcggcgatccacggcaacaaa
agccaggggcagcgcatgcgtgcgctgagcgacttcaaggccggccgcgtgaccgtgctg
gtggccaccgatatcgccgcgcgcgggatcgatatcgatcaactgccgaaggtcatcaac
tacgatctgccgatggtggccgaggactacgtgcaccgcatcggccgcaccggccgtaat
ggctcaaccggcgaggcgatttcgctggtggcgcaggacgaagccaagctgctgcgccag
atcgtgcgcatgctgggccgcgatgtggaaatccgcgacgtgccgggctacgagccgcag
accccgatccgctggggcaacagcgcgccgggtcgtgccgagcagccgggtggcgatcgc
gcgccgcgcaagagccatgcccgtcgtccgcacggcgatgcaccacgtcaggcgcacgcg
catgccggcccgaagaagccgggtggccagcgcagcaacgggccgcgtcaggccaacact
ggcgcgggtgcaggccggcgcgatggtggtcgtggtggtcagcgtccgagcggtacgcgc
tga
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