Xanthomonas axonopodis Xac29-1: XAC29_19460
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Entry
XAC29_19460 CDS
T02500
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
xao
Xanthomonas axonopodis Xac29-1
Pathway
xao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XAC29_19460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xao03019
]
XAC29_19460
Enzymes [BR:
xao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
XAC29_19460
Messenger RNA biogenesis [BR:
xao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XAC29_19460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RhlB
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AGH79289
LinkDB
All DBs
Position
complement(4509945..4511660)
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AA seq
571 aa
AA seq
DB search
MSDKPLTDVTFSSFDLHPALIAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKT
LAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYG
GVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDI
RFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETESITAARVRQRIYFPS
DEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLL
NRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISF
ACERYAMSLPDIEAYIEQKIPVEPVTSELLTPLPRAPRVPVEGEEADDDAGDSVGTIFRE
AREQRAAEEQRRGGGRGGPGGSRSGSGGGRRDGAGADGKPRPRRKPRVEGQAPAAAASTE
HPVVAAVAAQAPSAGVADAERAPRKRRRRRNGRPVEGAEPALASTPVPAPAAPRKPTQVV
AKPVRAAAKPSGSPSLLSRIGRRLRSLVSGN
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacaaaccgctgaccgatgtgaccttttcctcgttcgacctgcatccggccttg
atcgccgggctggagagcgccgggtttacccgctgtaccccgatccaggcgctgaccttg
ccggtcgcgctgccgggcggcgatgtcgccggccaggcccagaccggtaccggcaagacc
ttggcatttctggtcgcggtgatgaatcggctgctgatccgcccggccctggccgaccgc
aagccggaagacccgcgcgcgctgatccttgcgccgacccgcgagctggcgatccagatc
cacaaggatgcggtcaagttcggcgccgacctgggcctgcgctttgcgctggtctacggc
ggggtggactacgacaagcagcgcgagctgttgcagcagggcgtggacgtgatcatcgcc
accccgggccgcctgatcgactacgtcaagcagcacaaggtggtctcgctgcacgcctgc
gagatctgcgtgctggacgaagccgaccgcatgttcgacctgggcttcatcaaggacatc
cgcttcctgctgcggcgcatgcccgagcgcggcacccggcagacgttgttgttctcggcc
accctcagccaccgcgtgctggagctggcctacgagcacatgaacgagccggagaagctc
gttgtcgaaaccgaaagcatcaccgccgcgcgggtgcgccagcgcatctatttcccgtcc
gacgaagagaagcagacgctactgttgggcttgctgtcgcgcagcgaaggcgcgcgcacc
atggtgttcgtcaacaccaaggccttcgtggagcgcgtggcgcgcaccctggagcggcat
ggctaccgggtgggtgtgctgtcgggcgatgtgccgcagaagaagcgcgagtcgctgctc
aaccgcttccagaaaggccagctcgaaatcctggtcgccaccgacgtggccgcgcgcggt
ctgcatatcgacggcgtcaagtacgtctacaactacgacctgccgttcgacgccgaagac
tacgtccatcgcatcggccgcaccgcgcgtctgggcgaggaaggcgatgcgatcagcttc
gcctgcgaacgctatgcgatgagcctgcccgacatcgaggcctacatcgagcagaagatt
ccggtcgagccggtgacgtccgaactgctgacgccgctgccgcgcgcgccacgcgtgccg
gtggaaggcgaagaggccgacgacgacgctggcgacagtgtgggcacgatcttccgcgaa
gcgcgcgagcagcgtgccgccgaagaacagcgtcgcggtggtgggcgcggtggccccggc
gggtcgcgcagcggcagtggcggtggtcgccgcgatggcgcaggtgccgatggcaagccg
cgtccgcgtcgcaaaccacgggtggaaggccaagcgcctgcagctgcggcgtcgaccgaa
catccggtggttgctgcagtagcggcacaggcaccttccgcgggcgtggccgatgccgag
cgcgcaccacgcaagcgtcggcgtcgtcgtaacggtcgtccggtcgagggtgccgagccg
gcactggcatccacgccggttcccgcgcctgccgcaccgcgcaagcccacccaggtggtt
gccaagccggtgcgtgccgccgccaagccgtcgggtagcccgtcgctgctcagccggatc
ggccgccgactgcgttcgctggtctccggcaactga
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