Xylocopilactobacillus apicola: XA3_07660
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Entry
XA3_07660 CDS
T09717
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
xap
Xylocopilactobacillus apicola
Pathway
xap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XA3_07660 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xap03019
]
XA3_07660 (cshA)
03009 Ribosome biogenesis [BR:
xap03009
]
XA3_07660 (cshA)
Enzymes [BR:
xap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
XA3_07660 (cshA)
Messenger RNA biogenesis [BR:
xap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XA3_07660 (cshA)
Ribosome biogenesis [BR:
xap03009
]
Prokaryotic type
rRNA helicases
XA3_07660 (cshA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BDR58325
UniProt:
A0AAU9D7N0
LinkDB
All DBs
Position
751213..752730
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AA seq
505 aa
AA seq
DB search
MKFNELDLQPELLTAINDAGYVEMTPIQEQAMPVALANKDVMGQAQTGTGKTAAFGIPAI
QQANHNDHFVSTLIMSPTRELAIQTRDEIAKLGHDKKIRVMVVYGGSDIGRQIRDLKNPP
QILVGTPGRLQDHMNRKTVDFSHLKTLVLDEADEMLDMGFLEDISKIIRSLPKERQTLLF
SATLPQDIVQIGTAFMNNPVTVKVKSKELTADLIDQYYVKARDNEKFDFMTRLMDVQRPE
LALVFGRTKRRVDELTRGLKIRGFKAEGIHGDLTQQKRMNVLRMFKNSEIQILVATDVAA
RGLDIRGVTHVYNYDIPQDPDSYVHRIGRTGRAGRAGMSITFVNPREMDYLRGIEKLTKV
KMMPLMPPTAEKVQKELLDHAVSVIEDKSSSIHVNNYQKYAEKLVEEVDPMILASLLLQS
YTKSSSKNRPVSISVERPLPSKKKSSGKGYQKYNHGSSRRYNSKKPYHHDRDQKKYGQRD
HKRSSSNQAKTPKKVNRNFVIRTKA
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttaatgaactagatttacaaccagaacttttaacagcaattaatgacgccggt
tatgtggaaatgactccgattcaggaacaagcaatgccggtcgctttggctaataaagat
gtgatgggacaagcacagaccggaactggaaaaactgcagcgtttgggattccagcgatt
caacaagctaaccataatgaccactttgtttcgactttaataatgtcaccaacaagagag
ttggcaatccaaacccgtgatgaaatagcaaagcttggtcatgacaaaaaaatcagagta
atggtcgtttatggtggttccgatattggaagacaaattagagatttaaaaaatccgccg
caaatattagtaggaactccaggtcgcctacaagatcacatgaatcgaaaaactgttgat
ttttcgcatttgaagacgttagttttagatgaagctgatgaaatgcttgatatgggattt
ttagaagatatttctaagataattcgttcgttacctaaagaaagacaaactttattattt
tctgcaacattgccacaggatattgtccaaatcgggacggcatttatgaataatcctgtg
actgttaaagttaaatctaaagaattaactgctgatttaattgatcagtattacgtaaaa
gcgcgagacaatgaaaaatttgattttatgactcgtttgatggacgtacagcgaccggaa
ttagctctagtttttggacgaactaagagaagagtggatgagttgacacgcggattaaag
attcgtggctttaaggctgaagggattcacggtgatttaacgcaacaaaagcggatgaat
gtcttaaggatgtttaaaaacagtgaaattcaaattttggtagctactgatgtggctgca
cgtggtctcgatattcgcggagtaactcacgtttacaattatgatatcccacaagatccc
gatagttatgttcatcgaattggtagaaccggtcgggcaggacgagctgggatgtctatt
acatttgtcaatccgcgagaaatggattatttaagaggaattgagaaattaactaaagtt
aagatgatgcctttaatgcctccaacggctgaaaaggttcaaaaagagctgttagatcat
gctgtctcggttattgaagataagtcttcttcaattcatgtcaataattatcagaaatat
gctgaaaaattggttgaggaagttgacccgatgattttagccagtcttttgctgcaaagt
tatactaagagtagcagtaaaaatcggccagttagtatttcagtagagcgtccgttgccg
tcgaaaaagaagtcaagtggtaaagggtatcagaaatataaccatggttcatcacgtcgt
tataattccaaaaaaccatatcatcatgatcgtgaccaaaagaaatacggtcagcgagat
cataagcgttcatcttccaatcaggcaaaaactccaaagaaagtgaatcgtaattttgtg
attcgaactaaagcctga
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