Xylocopilactobacillus apicola: XA3_12570
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Entry
XA3_12570 CDS
T09717
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
xap
Xylocopilactobacillus apicola
Pathway
xap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XA3_12570 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xap03019
]
XA3_12570 (rnr)
03016 Transfer RNA biogenesis [BR:
xap03016
]
XA3_12570 (rnr)
Enzymes [BR:
xap01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
XA3_12570 (rnr)
Messenger RNA biogenesis [BR:
xap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
XA3_12570 (rnr)
Transfer RNA biogenesis [BR:
xap03016
]
Prokaryotic type
tRNA degradation factors
XA3_12570 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
S1_RRP5
RNase_II_C_S1
WG_beta_rep
Motif
Other DBs
NCBI-ProteinID:
BDR58816
UniProt:
A0AAU9DJX7
LinkDB
All DBs
Position
complement(1266531..1268762)
Genome browser
AA seq
743 aa
AA seq
DB search
MNEKQVLDKLRKIGPAAENSVIDLKDIGLDGHVEQKILKRLTVQRKIYLLDENHLVLAAL
ANDLHGIFKGTDKGFGFVDIENIELSVFIPPNKTRFALSGDEVSIVLTNTADLAANRGAT
GFVGSIIRRNKTEIIGEYLATTDSNRLAQGYEGYLRPLDGKLSKIPLYLRDPKHEIKLHD
LVVAEITDYPTRKHPDSFTGAIKEVLGNKDAPGVDTLSVLKGYDLRLDFPDDVLSQIQKI
PEEVRKEDFEDRADLTAETVVTIDGDDSKDFDDAVGLKLLDNGHYLLGVHIADVASYVLE
GSAIDHEAYERGTSTYLVGEVVPMLPFKLSNGICSLNPDVDRLTMTCEMEIDGDGKVVKH
RIFPSVIRSKGRLTYNLVNATFEGKKVPDIYENLRPMLEQMRNLHLILNGMRIKRGAIEF
EEREPQIVLDQNGHPIDIRIRERKDAEKMIESFMLAANETVAKEYYDRKLPFIYRVHEVP
DEEKISDFLNFANTLGLKRTAGLDPESPKVMQSILEQAKGTNDEQIVITKMLRSMKQAHY
AREPLGHYGIGAKYYTHFTSPIRRYPDLISHRLIHQYLTQKDHLGEAAKDIAAKIDSIAE
QASVRERVSVDVERDVIDLKKAEFMADKIGQVFDGVIGSAVSFGLFISLPNTVEGLVHIS
TLNDDYYNFSEDLLALVGEKSRKMYRVGQPVRVKLINVNVDLHQVDFELTSDTEAVLAPE
FEGVSDFTHSEGRHFVKKNEKEK
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaaaaacaagtattagataaattaagaaaaataggcccagcggctgaaaatagt
gttattgacctgaaagatatcggtttggacggtcatgtggaacaaaaaattttaaagcgt
ttgacggtccaaagaaagatttacctgttagacgaaaatcatttagttcttgcggcgtta
gctaatgatctgcatgggatctttaagggaactgataaaggatttggttttgttgatata
gaaaatattgaattatcagtttttattccgccaaacaaaactcgttttgctttaagtggc
gatgaagtttcgattgtattgaccaatacggctgatttggctgcaaatcgcggagcaacc
ggttttgtcggtagcattattcgtcgtaataaaactgaaatcattggagaatatttagca
accactgattctaatcgtttagcgcagggatacgagggatatctgcgtccgcttgatggc
aagttaagtaagattccactttatttgagagatcctaaacacgagattaagctccatgat
ttagtggttgctgaaatcacagattatccaacacgtaaacacccggattcttttacaggt
gctattaaggaagttctgggaaataaagatgctcctggtgtcgatacactaagtgtttta
aaaggttacgacttgcgcttagattttccagatgatgtattaagtcagattcaaaaaatt
cctgaggaagttagaaaagaggatttcgaggatcgcgcagatttaactgcagagactgtt
gttacaattgatggcgatgattccaaagatttcgatgatgcggttggcttaaagctttta
gataatgggcactaccttttaggggtacatatcgcagatgttgcgagctacgttttagaa
ggaagtgcaatcgatcatgaggcttacgagcgggggactagtacctatttagtaggtgag
gtagtaccgatgctgccatttaagctttcaaatgggatttgttcactgaatcctgatgta
gatcgcttaacgatgacttgcgaaatggaaatagatggtgacggtaaagttgtaaagcat
cgaatttttccttcggtaattcgttctaagggacgtttaacttataatctcgtcaatgca
acttttgaaggcaaaaaagtacccgacatttacgagaatcttcgtccaatgcttgaacaa
atgcgtaatttgcacttaattttaaatggaatgcggattaaacgaggcgcgattgagttt
gaggaaagagaacctcaaattgttcttgatcaaaacgggcatccgatcgatataaggatt
agagaacgaaaagatgctgaaaaaatgatcgaatcatttatgttggcagctaatgaaact
gttgccaaggaatattacgatcggaagttaccgtttatttatcgggtacatgaagtgcca
gatgaagaaaaaattagcgattttctaaattttgctaacacgttaggattaaaacgcacc
gccggtcttgatccagagtcgccaaaagttatgcaatctattttagagcaggcaaaaggg
acaaatgatgaacaaattgtaattactaaaatgcttcgatcgatgaagcaagctcattat
gcgcgggagcctttaggacattatgggattggggccaaatattacacgcattttacttcg
ccaattagacgctaccccgatttgatttcccatcgtttgattcaccaatatttgactcaa
aaagaccatctaggtgaagcagcaaaagacattgctgctaaaattgattccattgctgag
caagcatcagtccgtgagcgagtttcagttgacgtcgagcgggatgtaattgatttaaag
aaggctgaatttatggcagataagattggtcaggtgttcgatggtgtgattggttcagca
gttagtttcgggcttttcattagtttgccaaacacggttgaaggtttggttcatatttca
acgttgaacgatgattattataatttctctgaggatttattagcgttggttggagaaaaa
tctcgtaaaatgtatcgagtgggtcaaccggtaagggtgaagttgattaatgttaatgtt
gatcttcaccaagtggattttgaattaactagtgatactgaggcggttttagctccagag
tttgaaggagtgagtgattttactcattcagaaggtcgacattttgtaaagaaaaatgaa
aaagaaaaatga
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