Xylocopilactobacillus apicola: XA3_12810
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Entry
XA3_12810 CDS
T09717
Symbol
srmB
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshB
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
xap
Xylocopilactobacillus apicola
Brite
KEGG Orthology (KO) [BR:
xap00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xap03019
]
XA3_12810 (srmB)
03009 Ribosome biogenesis [BR:
xap03009
]
XA3_12810 (srmB)
Enzymes [BR:
xap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
XA3_12810 (srmB)
Messenger RNA biogenesis [BR:
xap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XA3_12810 (srmB)
Ribosome biogenesis [BR:
xap03009
]
Prokaryotic type
rRNA helicases
XA3_12810 (srmB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
PRAI
SMC_N
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BDR58840
UniProt:
A0AAU9DBE3
LinkDB
All DBs
Position
complement(1297536..1298717)
Genome browser
AA seq
393 aa
AA seq
DB search
MIGMSETGSGKSHAFLLPLFNNLDLAKKEIQAVIVSPSRELAEQLASMADELNQLLPVPA
KIQLLIGGKELSRLEAKVENNLPQIVIGTPGRIVELLPELRKHYASFVSLVIDEADMALD
LGNAENLNVILETLPNLHQILFFSATINQQLQLMIKKYLHGDVAIKQVPNEKVINDNVKN
YLISTRSLTKEEIIYRLVTRKPEFLVFIFANTKKRVEEIYQFLSAKGLNIAQMHGDLPSR
RRHQIMKKIINLDYEFVVSTDLAARGIDIPGISLIVNDDIPNDLEYFIHRVGRTARMGQK
GVAITLYQQDLKKVKALEAKGIKFQEVRLSKGELVKIDHRKRRERHREQLANHHRDVLVP
SRMKKVKPGYKHRINSYTKRQMRRKGKQSNERA
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
gtgattgggatgtcggaaactggcagtggaaaaagtcacgcttttttattgccattattt
aataatcttgatttggctaaaaaagaaattcaggcagtgattgtttcgccgagtcgcgaa
ttagctgaacaattagcttcgatggcagatgagttgaatcaattattgccagtacctgca
aaaattcagcttttgattggtggtaaagaattatcacgtcttgaagcaaaagttgaaaat
aatttaccacaaattgtgattggaacacctgggcgaattgtcgaattgttgccagagctt
agaaaacattacgcctcgtttgtttctttggtgattgacgaagcagatatggcacttgat
cttggaaatgccgagaatttgaacgtgattttagagacacttcctaatcttcatcaaatt
ttgttcttctcagcgacaataaatcaacaacttcagttgatgatcaaaaagtatttacac
ggggatgttgcaattaagcaagttcctaacgaaaaagtcatcaacgataatgtcaagaat
tatctaatttctacacgttctctaacaaaagaagaaattatttatcgccttgttactaga
aaaccagagtttttggttttcatttttgctaacaccaaaaagagagttgaagaaatctat
caatttcttagtgcaaaaggcttaaacattgctcagatgcatggcgatttaccgagtcgt
cgcaggcatcaaattatgaaaaagattattaatcttgattatgaatttgttgtttcgact
gatttagcagctcgtggtattgatattcctgggattagtttaattgttaatgatgatatt
cctaatgatttagagtattttattcaccgggtcggtcgaactgctcgaatgggtcaaaaa
ggggttgcaatcactttgtatcaacaagaccttaaaaaagtaaaagctttggaagcaaag
ggaattaaattccaagaagtacgactttccaagggagagctggtaaaaattgatcaccgt
aagcgtcgtgaacggcatcgtgaacagcttgctaatcatcaccgagatgtgttagtgcct
agccgaatgaagaaagtaaagcctggttataagcatcgcattaactcgtataccaagcgt
caaatgagaagaaagggcaagcagtctaatgaaagagcttaa
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