Xylocopilactobacillus apicola: XA3_14680
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Entry
XA3_14680 CDS
T09717
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
xap
Xylocopilactobacillus apicola
Pathway
xap03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xap00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
XA3_14680 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xap03021
]
XA3_14680 (rpoC)
03400 DNA repair and recombination proteins [BR:
xap03400
]
XA3_14680 (rpoC)
Enzymes [BR:
xap01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
XA3_14680 (rpoC)
Transcription machinery [BR:
xap03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
XA3_14680 (rpoC)
DNA repair and recombination proteins [BR:
xap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
XA3_14680 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
BDR59027
UniProt:
A0AAU9DDW3
LinkDB
All DBs
Position
complement(1508310..1512104)
Genome browser
AA seq
1264 aa
AA seq
DB search
MIDVNKFDSMQIGLASPDKIRSWSYGEVKKPETINYRTLKPERDGLFDERIFGPTKDWEC
ACGKYKRIRYKGIVCDRCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGIPSRIGLILDV
SPRVLEEVIYFSAYIVIEPGKTTLEEKQILTEREYRDKKAEFYKIVTDPLETDLKAGQLL
SQDDYMKAFQKFGAHSFESKDAFLAKMGAEGIKDLLRNVDLEKSVAELKQELKEASGQRR
VRDIRRLDILEAFLKSGNHPEWVVMDAIPVIPPDLRPMVQLEGGRFATSDLNDLYRRVIN
RNNRLKKLLELNAPGIIVQNEKRMLQEAVDALIDNGRRGRPVTGPGNRPLKSLSHMLKGK
QGRFRQNLLGKRVDYSGRSVIDVGPTLKFSQCGLPRTMALELFKPFVMSELVQRELASNV
KSARRMIDRQDNEVWDILEDVLKERTVLLNRAPTLHRLGIQAFEPVLVEGKSIRLHPLAC
EAYNADFDGDQMAVHVPLSDEAQAEARLLMLAAHHILAPKDGKPIVSPSQDIVLGNYYLT
IEENGREGEGSIFENTNEAMLAFQNGVVSLHTRVGVAVSSMPDKPFTKKQQNEILLTTIG
KLIFNSIMPKDFPYLNEPTNENLVHGVPEKFFLKKGEDINEILAARELVGPFKKGFLSDV
IAEVFKIYKVQRTTDLLDDMKTLGYTQATNSGITVGVADITNLKDKKRIVAGAHKKVETI
SNQFRRGLITEEERHDRVIGVWNDAKDEIQDKLMASFDQKNPISMMSDSGARGNISNFTQ
LAGMRGLMAAPNGGMMEVPVTSNFREGLSVLEMFMSTHGARKGMTDTALKTANSGYLTRR
LVDVAQDVIVREDDCGTDRGVEVSAITEGNEIIEPLYDRLLGRYTMKTVFDPETGKKLVG
KNVFLDEAKSQMLIDHNVESVTIRSLFTCKTRHGVCRMCYGRNLATGTSVEVGEAVGTVA
AQSIGEPGTQLTMRNFHTGGVAGGEDITQGLPRVEEIFEARNPKGQATITEVGGTITAIN
EDPATHTREIVVHNNDEEKTYTIPYTASLAVAQGDVVERGDRLTGGSIDPKHLLQTKNTA
STEAYLLAEVQKVYRMQGVDISDKHLEVMVRQMLRKVRVMDPADTDILPGTLMDISDFED
QNAATIKSGKVPATARPVLLGITKAALETNSFLSAASFQETTRVLTDTSIRGKNDPLIGL
KENVIIGKLIPAGTGMKRYQDMEPVADVPLQAEEQTVNELEKKYKSEENLYEKIKNDKAP
NNYE
NT seq
3795 nt
NT seq
+upstream
nt +downstream
nt
ttgattgatgttaataaatttgacagtatgcagatcggtcttgcatcaccggataagatt
agaagttggtcttatggtgaggtcaaaaaacccgagacgatcaattatcgaactttaaag
cctgaacgagatggcttattcgatgaacggatttttggtccaacaaaggattgggaatgt
gcctgtggtaaatacaaacggatccgctataagggaattgtttgtgatcgctgtggcgtt
gaagttacgcgttccaaggttcgtcgcgaacgaatgggacatattgagttagcagctcct
gttactcatatttggtattttaagggaattccatctcggatcgggttaattcttgatgtt
tctccgcgcgttttagaagaagtaatttatttttcagcttacattgtaattgagccaggc
aaaactactttagaagagaaacaaattttaactgagcgcgaatatcgggataagaaggct
gaattttataagattgtaaccgatccgctagaaacggatttaaaggctggtcagctttta
tcacaagatgattacatgaaagcttttcaaaaattcggtgcccatagctttgaaagtaaa
gatgctttcttagctaaaatgggagccgaagggattaaagatctgctgagaaatgttgat
ttagaaaaatcggttgccgaattaaaacaagaattaaaagaagctagtggtcaacgacgt
gttagagatatcagacgtttggacattctagaagccttcttgaagtctgggaatcatcct
gagtgggttgtaatggatgcgattccggtaattccaccagatcttagaccgatggttcag
cttgaaggcggcagatttgctactagtgacttaaatgatttatatcgaagggtaattaat
cgaaataatcgactcaagaaattgttagaacttaatgcaccaggaatcattgtgcaaaat
gaaaagcggatgctccaagaagctgttgatgcattaattgataatggtcgaagaggtcgt
ccagttacaggtccaggaaaccggccattgaagtcattaagtcatatgcttaaagggaag
caaggacgtttccgtcagaacttgctgggaaaacgtgttgactattcagggcgttcagtt
attgatgttggaccaacgttgaagttctctcaatgtggtttgccaaggacgatggcgctt
gagttatttaaaccatttgtcatgagtgaattggttcaacgcgaattagcttctaatgtg
aaaagtgcccgccggatgattgatcgccaagacaatgaagtttgggatattttagaggat
gtacttaaagaaagaactgttcttttgaatcgggctcccacgttgcaccgtttgggaatc
caagcttttgaacctgtcttagttgaaggtaaatcgattcggttacatccgttggcttgt
gaagcttacaatgccgattttgatggtgatcagatggcggttcacgttcctttatctgat
gaagctcaggcagaagctagattgttaatgttagcggctcaccatattttggcgccaaaa
gacggtaaaccaatcgttagtccttctcaggatatcgttttagggaattattatttaacg
attgaagagaatggtcgtgagggcgaaggtagtatttttgagaatactaatgaagcaatg
ctggcttttcaaaatggagtggttagtctgcatactcgagttggtgttgcagtctcatcg
atgccagacaaaccgtttacgaagaaacagcaaaatgaaattttgcttactacgatcggt
aagttaattttcaattcgattatgcctaaagatttcccttatctcaatgagccaacaaat
gaaaatttggttcatggagttcctgaaaagtttttcttgaaaaaaggggaagatattaat
gaaattcttgctgcgcgcgaattagttgggccttttaaaaagggattcttgagtgatgtc
attgccgaagtttttaagatttataaagttcagcggaccaccgatcttctggatgacatg
aagactttgggttacacacaagctactaattcaggaataacggtgggagtagctgacatc
accaatttaaaggacaaaaaacgaatcgttgcaggtgctcataagaaggttgaaactatt
tctaatcaatttagacgtggtttgatcactgaagaggagcgccatgatcgagttattggt
gtttggaatgatgctaaagatgaaattcaggataaattgatggcttcttttgatcagaaa
aatccaatttcgatgatgagtgattctggtgctcgtggtaatatttctaactttacgcag
ctcgctgggatgcgtggtttgatggctgctcctaacggcgggatgatggaagtaccggtt
acttcgaatttccgagaaggcttgagcgttttggaaatgttcatgtctactcacggtgct
cgtaaaggaatgaccgatacggctttgaaaacagcaaactcgggttacttaactcgtcgt
ttggttgatgtagctcaagatgtgattgtaagagaagacgattgtggaactgatcgtggt
gttgaagtttcagcaattactgaaggcaatgaaataattgaaccattgtatgatcgtctt
cttggacgttacacaatgaaaactgtttttgatcctgagaccggcaagaaattggtcggt
aagaatgttttcttagatgaagcaaaatctcagatgttgatcgatcataatgttgagagt
gttacgattcgttcactgttcacttgtaagactcgccacggagtttgtcggatgtgttat
ggacgtaacttggcaacgggaacctcagttgaagtaggtgaagcagtgggaactgttgca
gctcagtcaatcggtgaacccggaactcagctgacgatgcgtaacttccatactggtggg
gttgcaggtggtgaagatatcactcaaggtcttccccgggttgaagaaatttttgaagct
cgtaatcctaaaggacaggcaacaatcactgaagttggtggaacgatcacggcaattaac
gaagatccagctactcataccagagaaatcgttgtacacaacaacgatgaggaaaaaact
tacacgattccatatactgcaagtcttgcagtagcgcaaggcgacgtcgtagaacgagga
gatcgtttaacaggtggatcaattgatccaaaacatttactacaaacgaaaaatactgca
tccactgaagcttatttattagcagaagtccaaaaggtttatcgtatgcagggtgttgat
atctccgataaacatttggaagtaatggttcgccaaatgttaagaaaagtccgagttatg
gatccagccgatacagatattttgccaggaactctaatggacattagtgatttcgaagat
caaaatgctgcgactattaagtctggtaaagtgccagctactgctcggccagttctcctt
gggattacaaaagcagctttggaaacaaatagtttcttgtctgctgcatccttccaggaa
acaacaagagtcttaactgatacttctattcgaggcaagaatgatccgttaattggtttg
aaagaaaatgtcattattgggaagttgatcccagctggtactggaatgaaacgctaccaa
gatatggaaccagttgctgatgttccacttcaagctgaagaacagacagttaatgaatta
gaaaagaaatataagtcggaagaaaatctatacgaaaagattaaaaacgacaaagcacca
aataattacgaataa
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integrated database retrieval system
