KEGG   Xanthomonas arboricola: XB05_03730
Entry
XB05_03730        CDS       T06096                                 
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
xar  Xanthomonas arboricola
Pathway
xar02024  Quorum sensing
xar03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:xar00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    XB05_03730
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    XB05_03730
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xar03019]
    XB05_03730
   03036 Chromosome and associated proteins [BR:xar03036]
    XB05_03730
Messenger RNA biogenesis [BR:xar03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     XB05_03730
Chromosome and associated proteins [BR:xar03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    XB05_03730
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: AKC81226
LinkDB
Position
880312..880590
AA seq 92 aa
MAKGQSLQDPFLNALRRERVPVSVYLVNGIKLQGTIESFDQFVVLLRNTVSQMVYKHAIS
TVVPARNVRVGPGGGYVQSNEGNQAEDDDVEQ
NT seq 279 nt   +upstreamnt  +downstreamnt
atggctaaggggcaatctttacaggacccattcctcaacgcgctgcggcgcgagcgggtg
ccggtttctgtgtatctggtcaacggcatcaagctgcagggcacgatcgagtcgttcgac
cagttcgtggtcctgctgcgcaataccgtgagtcagatggtctacaagcacgccatctcc
acggtcgtgccggcgcgcaatgtgcgcgtgggaccgggtggtgggtatgtgcaatccaat
gaaggcaaccaggcggaagatgacgacgtcgagcagtaa

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