Xanthomonas arboricola: XB05_05835
Help
Entry
XB05_05835 CDS
T06096
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
xar
Xanthomonas arboricola
Pathway
xar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XB05_05835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xar03019
]
XB05_05835
03009 Ribosome biogenesis [BR:
xar03009
]
XB05_05835
Enzymes [BR:
xar01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
XB05_05835
Messenger RNA biogenesis [BR:
xar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
XB05_05835
Ribosome biogenesis [BR:
xar03009
]
Prokaryotic type
rRNA processing factors
XB05_05835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
zf-C2H2_FBX41
Motif
Other DBs
NCBI-ProteinID:
AKC78308
LinkDB
All DBs
Position
1389409..1393146
Genome browser
AA seq
1245 aa
AA seq
DB search
MLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAE
RHGFLPLKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGNKGAALTTFISLAG
RYMVLMPNSPSAGGVSRRIEGEDRAALKEALDKLDIPDDMGVIIRTAGVGRDAEELQWDL
DYLLQTWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADIGEILVDTPELYADAQEFM
QQVMPQSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAVDVN
SSRATKGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASTKHQREVENRLQN
ALKYDRARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLSIIR
VAEEHAMKENTGQVLVQAPVEIANYLLNEKRSALREIEQRHESPIIIVADEQLHTPHYEV
TRLRENELGEDSGKPSYQRGTPRKLPVHALTKAQLNIPAAPAVTSIKPSQPAPLREEAPA
PVAAAPAPAPVAPLPLPAPVTGVVGWLKRIFGGVEPVAPAPESTQRPRQNDAGRSSRNER
GDRGGQRRDGRDARNGGNGGNQHRSNGGNGNGNGANKERRDERRQPANGQAAQNGGQAQQ
VQVPKPPRNEAQQQPKQPQQPQQQKQKPQNQVPRPPRAAAQQQDGAPSERQQRPARQEEG
TASAQTLTSTAATATTATVVAAIADTAAPATPVAAAAVTPAHPVEVIVTESHADRGTDAN
AEGQAPEAAGDDAASGEGGSRRRRGRRGGRRRRRGAGANGEGGTGVDGLETDDLDGDAEG
DLDGDNESDEAGAQVHTSAAPRAGQPEFDFDDEASTPAVSARAKPESSTPAAVKPRPVPK
ERAEAPLAADTTSTTAPVSNATPSFEQQAATPIVTAAEHARGDASVASPAPAATASASNT
APATSAPVAQASAAASTTPQAPQAPVVAQESATPPAQAPVAAPAPSAASPSVAASAPVAT
PAAAPAAQPVERAAPSAVRSPEPAVQSTSVPPASADATAPAVARQEQAAPVAATTASQAE
PVKTDAAPPAVSVPKPVAAAPSSAQADVVTSKPQHAEPSTAASPAADVAATSTATVPQTS
PSADAAPARKPYAPVQTTLLDALAPAHATAATATSTQAETPVLYKAPERPAVVAPVVSAD
ANEQTADKPKPTVVVSETAKPADAARIGDDAQEQQDDTNKPRGDH
NT seq
3738 nt
NT seq
+upstream
nt +downstream
nt
atgctgatcaacgcaacgcaggccgaagagctgcgcgtggcgattgtggacggccagacc
ctgtacgacatcgacatcgaacagccgtccaaggaacaaaagaagtccaacatctacaag
ggccgtatcacccggcttgagccctcgctggaggcggcgttcgtggactatggcgccgag
cgccatggcttcctgccgctgaaggaaatctcccgcgactatttccaggctggtgtcgac
cacaacaagtcgaccatccgcgagttgctgcgcgagggccaggaaatcgtggtgcaggtc
gacaaggaagagcgtggcaacaagggcgccgccctgaccacgttcatctcgctggccggc
cgctacatggtgctgatgcccaattcgcccagcgccggtggtgtatcgcgccggatcgaa
ggcgaagaccgcgccgcgctgaaggaagcgctggacaagctcgacatccccgatgacatg
ggcgtgatcatccgcaccgcgggtgtcggccgtgacgccgaagaactgcagtgggatctg
gactacctgctgcagacctggaaggcgatcgccgaagcggcgctgagcaagccggccgcg
ttcctgatctaccaggaatcgcgcctgatcatccgcgccctgcgcgactacctgcgtgcc
gacatcggcgaaatcctggtcgatacgccggagctatatgccgacgcccaggaattcatg
cagcaggtgatgccgcagagcctgcgcaagctcaagcactacaccgacgacattccgctg
ttcaaccgcttccagatcgaatcgcagatcgaaggcgcctacgagcgcaacgtgcgcctg
ccgtcgggtggctcgattgtggtcgaccagaccgaagcgctgaccgccgtcgacgtgaac
tcctctcgcgccaccaagggtagcgacatcgaagagaccgccttccagaccaatctggaa
gcggccgaagaagtggcccgccagctgcgcctgcgcgacctgggcggcctggtggtgatc
gacttcatcgacatggcctcgaccaagcaccagcgcgaagtcgaaaacagactgcagaac
gcgctcaagtacgaccgcgcacgcgtgcagctgggccgcatctcgcgcttcggcctgatg
gaaatgagccgccagcgcctgcgtccgagcctgggcgaatccagccagatcgtgtgcccg
cgttgcgatgggcatggccgcatgcgcagcgtcgagtcgctgtcgctgtcgatcatccgc
gtggccgaagagcacgccatgaaggaaaacaccggacaggtgctggtccaggccccggtg
gagatcgccaactacctgctcaacgaaaagcgcagcgcgctgcgcgagatcgagcagcgc
cacgagtcgccgatcatcatcgtcgccgacgagcagctgcacaccccgcactacgaagtc
acgcgtctgcgtgagaacgagctgggcgaagacagcggcaagccgagctaccagcgcggc
accccgcgcaagttgccggtgcatgcactgaccaaggcacagttgaatatcccggctgcg
ccggcagtgacctcgatcaagccgagccagccggctccgctgcgtgaggaggcccctgcc
ccggttgccgctgcacctgcaccggctccggtcgcgccactgccgcttcccgcgccggtc
actggtgtggtcggctggctgaagcgcatcttcggcggcgtcgagccggttgcgcctgcg
cccgagtcgacccagcgtccgcgtcagaacgatgccggccgcagtagccgcaacgagcgt
ggcgatcgtggcggccagcgtcgcgacggccgcgatgcccgcaatggtggcaacggtggc
aatcagcaccgcagcaatggcggtaacggcaacggcaatggcgccaacaaggagcgtcgt
gacgagcgtcgccagccggccaatggccaggctgcgcaaaacggcggtcaggcgcagcag
gtgcaggtgcccaagccgccgcgcaacgaagcacagcaacagcccaagcagccgcagcag
ccccagcagcagaagcagaagccgcagaaccaggtaccgcgcccgccgcgtgcagctgcg
cagcagcaagacggcgcgccgtccgagcggcagcagcgccctgcgcgtcaggaagaaggc
actgcctcggcacagacgctgacctcgactgctgcaaccgcaacgactgcaaccgtggtc
gcggcgattgccgacaccgcagcaccggcaacgccggtagcggcagcggcggtcaccccg
gcgcatccggtcgaggtcatcgtgaccgagtcgcatgccgatcgcggtaccgacgcaaat
gcggagggccaggcaccggaggcagcaggcgatgatgcggcaagtggcgaaggcggcagc
cgtcgtcgtcgcggtcgtcgcggtggccgtcgtcgccgtcgtggcgctggcgcaaacggt
gaaggcggtaccggcgtcgatggtctggagacagacgatctggacggcgacgccgaaggc
gatctcgatggcgacaacgagagcgacgaagccggtgcgcaggtccacacctcggctgcc
ccgcgcgccggtcaaccggagttcgacttcgacgacgaggcgagcacgcccgcggtatcg
gcacgcgccaagccggaatccagcactccggccgcagtgaagccgcgtccggtcccgaag
gagcgtgcggaagcaccgctggcggctgacactacgtcgaccacggcgccggtttccaat
gccacgccgtcgttcgagcagcaggctgcaactccgatagtcaccgcagcagaacacgca
cgcggcgacgcatcggtggcctctccggcaccggctgcaaccgcctcggccagcaacacg
gcgccggctacatcggcaccggttgcgcaggcttctgccgctgcatcgacgaccccgcaa
gcgccgcaggctccggttgttgcgcaggaatcggcgaccccgccggctcaggcgccggtt
gccgctccggctccgtccgctgcctcgccatcggttgccgcctcggcgccggtcgcaacg
ccagccgctgctcctgcagctcagccggtcgagcgtgctgctccttcggccgtgcgttcg
cccgagccggctgtgcagtcaacctcggtgccgccggcatcggccgacgctacagcacct
gcggttgctcggcaggaacaggcagcaccggtggcagccacgacagcatcgcaagcggag
ccggtgaaaaccgacgcagcgccgccagccgtcagtgtgccgaagccggtcgctgctgcg
ccttccagcgcgcaggcggacgtcgtgacgtccaagccgcagcatgccgagccgtcaacg
gcggcaagcccggcagccgatgttgctgccacgtccaccgccacagtgccgcagacctcg
ccgtctgccgacgctgcgccggcacgcaagccgtacgctcctgtgcagaccacgctgctt
gacgcattggctccggcccacgcaacagcagcgaccgcgacatcgacgcaggccgaaacg
ccggtgctgtacaaggcgcctgagcggccggcagtggtcgcgcccgtggtgtctgcagac
gccaacgagcagactgccgacaagccgaagccgacggtcgtcgtgtccgagacagcaaag
ccggcagatgcagcgcgcattggcgatgacgcgcaggagcagcaggacgacaccaacaag
ccgcgtggcgatcactga
DBGET
integrated database retrieval system
