Xanthomonas arboricola: XB05_14140
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Entry
XB05_14140 CDS
T06096
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
xar
Xanthomonas arboricola
Pathway
xar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XB05_14140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xar03019
]
XB05_14140
Enzymes [BR:
xar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
XB05_14140
Messenger RNA biogenesis [BR:
xar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XB05_14140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RhlB
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AKC79772
LinkDB
All DBs
Position
complement(3360971..3362689)
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AA seq
572 aa
AA seq
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MSDKPLTDLTFSTFDLHPALIAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKT
LAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYG
GVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDI
RFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETESITAARVRQRIYFPS
DEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLL
NRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISF
ACERYAMSLPDIEAYIEQKIPVEPVTSELLTPLPRTARVPVEGEEADEDAGDSVGTIFRE
AREQRAAEEQRRGGGRSGPGGASRSGSGGGRRDGGSADGKPRPRRKPRVEGEAPAAAAPT
ETPVVAAASVEAPSTIVADAERAPRKRRRRRNGRPVEGAEPAVASTPVAAPAAPRKPTQV
VAKPVRSAAKPSGSPSLLSRIGRRLRSLVSGN
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacaaaccgctgaccgatttgactttttccacgttcgacctgcatccggcgctg
atcgccgggctggagagcgccgggtttacccgctgtaccccgatccaggcgctgaccctg
ccggtcgcgctgccgggcggcgacgtcgccggccaggcccagaccggcaccggcaagacc
ctggcgttcctggtggcggtgatgaaccgcctgctgattcgcccggcgctggccgaccgc
aagccggaagacccgcgcgcgctgatcctagcgccgacccgcgagctggcgatccagatt
cataaggacgcggtcaagttcggcgccgacctgggcctgcgctttgcgctggtctacggc
ggggtggactacgacaagcagcgcgagctgttgcagcagggcgtggacgtgatcatcgcc
accccgggccggctgatcgactacgtcaagcagcacaaggtggtctcgctgcatgcctgc
gagatctgcgtgctggacgaagccgaccgcatgttcgacctgggcttcatcaaggacatc
cgcttcctgctgcggcgcatgcccgagcgcggcactcgccagaccctgctgttctcggcc
acgctcagccaccgcgtgctcgagctcgcctacgagcacatgaacgagccggaaaagctg
gtcgtcgaaaccgagagcatcaccgccgcacgggtgcgccagcgcatctatttcccgtcc
gacgaagagaagcagacgctgctgctgggcctgctgtcgcgcagcgaaggcgcgcgcacc
atggtgttcgtcaataccaaggcgttcgtcgagcgcgtggcgcgcaccctggagcggcat
ggctaccgggtcggcgtgctgtcgggcgacgtgccgcagaagaagcgcgagtcgctgctc
aaccgcttccagaagggccagctcgaaatcctggtcgccaccgacgtggccgcgcgcggc
ctgcacatcgacggcgtcaagtacgtctacaactacgacctgccgttcgatgcggaagac
tacgtgcaccgtatcggccgtaccgcgcggctgggcgaagagggcgatgcgatcagcttc
gcctgcgagcgctatgcgatgagcctgccggacatcgaggcctatatcgagcagaagatt
ccggtcgagccggtgacctccgagctgctgacgccgctgccgcgcaccgcgcgtgtaccg
gtggaaggcgaagaggccgacgaggatgctggcgacagcgtgggcaccatcttccgcgag
gcgcgcgaacagcgtgctgccgaagagcagcgccgcggcggtggtcgcagcggcccgggc
ggcgcatcgcgtagcggcagtggcggtggtcgtcgcgacggcggcagtgccgatggcaag
ccgcgtccgcgtcgcaagccgcgtgtggagggcgaagccccggcagcggcagcgccgacc
gaaacgccggtggttgcggcggcgtcggtcgaggcgccttccaccatcgtggccgatgcc
gagcgcgcaccacgcaagcggcgccgtcgtcgcaacggccgtccggtcgaaggtgccgag
ccggcagtggcctccacaccggtcgccgcacctgccgcaccgcgcaagcccacccaggtg
gtcgccaagccggtgcgcagcgccgccaagccgtccggcagcccatcgctgttgagccgc
atcggccgtcgcctgcgctcgctggtgtccggcaactga
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