Xanthomonas arboricola: XB05_17245
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Entry
XB05_17245 CDS
T06096
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
xar
Xanthomonas arboricola
Pathway
xar03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
xar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
XB05_17245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xar03400
]
XB05_17245
Enzymes [BR:
xar01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
XB05_17245
DNA repair and recombination proteins [BR:
xar03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
XB05_17245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AKC80300
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All DBs
Position
4111647..4114415
Genome browser
AA seq
922 aa
AA seq
DB search
MSLHDYNAKRRFDQTPEPAGDTPARASKQPIFVVQLHHASSRHYDFRLEADGVLKSWAVP
KGPSLRVGEKRLAVQVEDHPLSYASFQGDIPQGHYGAGHVDVFDHGHWQCEGDALAALEA
GKLEFELQGKLLRGGFALVRTQMRGGKPQWLLFKRSDAYAADLDADALVAQQAAGASAAV
APATRVKASRARRAPAATASAGTTAAGKRARPARADARQWRTRALALDGARDAPCPTELR
AQLTLLREQAPDGERWLHEIKWDGYRLLADMVDGQVQLRSRNDQAWTQRFPDVVRAVQAL
PVRDARLDGELVVLDAQGRSDFSALQRALDGSVTQPLRYIVFDLLGVAGVDLRDTPLLQR
KQLLHDVLGDVPGTLAFSDHVIGHGPEVFAASAGTGWEGIVSKLADARYREGRSADWVKT
KHEDSDEFVVVGYTDPKGARSGFGALLMAQREGKTLRYVGRVGTGFDDALLGKITALLQA
LHSDTATLELPTHIPGRPRDVHWVRPVLIAEVAFRGWAKEGLLRQAAFKRLREDKPMSEL
GGDRAAPAKARAAGKGSAATTATAPARKAATKKTSRTTVEVSTSTASKRVRSTASKTTAT
TTSKKAAAPTSTASKSTAFKSTTSKSTSTATSTDGITITHPERVVFPAAGLSKGDVADYY
RAVAPLVLAEIARRPLSLLRCPDGAGGDCFFQKHEGRHLGTHIKAIPLQQKSGTEDYIYV
EDAAGLLELVQMNTLELHPWGAQVDDAEHPDRLVFDLDPGDGVSWADVVAAARDIRAKLR
SAGLESAVRLSGGKGLHVVVPIVPEADWEQARDFCEAFAQALATHAPDRYVATMSKAKRH
GVIFVDWLRNGRGNTSVCSWSLRAREKATVAVPLRWEELGKISGPDAFPMDKALQRAKRQ
RADPWESVLALQQYLPTGDDNH
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atgtcattgcacgattacaacgccaagcgccgcttcgaccagaccccggagccggccggc
gacacgccggcgcgcgccagcaagcagccgatcttcgtcgtgcagttgcaccacgccagc
tcgcgccattacgacttccgtctggaagccgacggcgtgctcaagagttgggccgtgccg
aagggcccatcgttgcgcgtgggcgaaaagcgcctggcggttcaggtggaggaccacccg
ctgtcgtacgccagcttccagggtgatattccgcagggccattacggcgccgggcatgtg
gacgtgttcgaccacgggcattggcagtgcgaaggcgatgcgttggcggcactggaagcc
ggcaagctggagttcgaactacagggcaagttgctgcgcggcggttttgcattggtgcgc
acgcagatgcgcggcggcaaaccgcaatggctgctgttcaagcgcagcgatgcgtacgcc
gcagatctggatgccgatgcgctggtggcgcagcaggccgctggcgcatcggctgcagtg
gcgccggcaacccgtgtcaaggccagccgggcgcggcgcgcgccggcggcaacggcgagc
gccgggacgactgcagccggcaaacgcgcgcgcccggcgcgtgcggacgcccggcaatgg
cgtacccgcgccctggcgctggacggcgcgcgcgatgcgccatgtccaaccgagctgcgc
gcgcaactgaccttgctgcgcgagcaggcgccggatggcgagcgctggttgcacgagatc
aagtgggacggctaccgcctgctggccgacatggtcgatggccaggtgcagctgcgctca
cgtaacgaccaggcctggacacagcgcttcccggacgtggtgcgcgcagtgcaggccctg
ccggtgcgcgatgcgcgcctggatggcgagctggtggtgctggatgcgcaagggcgcagt
gatttctcggcattgcaacgcgcgctcgatggcagcgtcacgcagccgctgcgctacatc
gtgttcgacctgctcggcgtggccggagtggatctgcgcgacaccccgctgctgcaacgc
aagcagttgctgcacgacgtgctgggcgatgtgccgggcacgctggcgtttagcgaccat
gtgatcggccacggcccggaggtcttcgcggccagcgccggcaccggctgggaaggcatc
gtcagcaagctcgccgatgcgcggtatcgcgaagggcgcagcgccgattgggtcaagacc
aagcacgaagacagcgacgagttcgtggtggtgggctacaccgaccccaagggcgcgcgc
agcggcttcggcgccttgctgatggcgcaacgcgagggcaagacgctgcgttatgtcggg
cgtgtgggcaccggcttcgacgatgccttgctcggcaagatcaccgcgctgttgcaggcg
ctgcacagcgacactgccacgctggaattgccgacgcacattcccgggcggccacgcgat
gtgcattgggtacggccggtcttgatcgccgaggtcgccttccgcggctgggcgaaggaa
ggcctgctgcggcaggccgcattcaagcgtctgcgcgaggacaaacccatgagcgagttg
ggcggcgaccgcgccgcgccggccaaggcgcgtgctgcaggtaaaggcagtgctgcgacc
acggccactgcgcctgcgcgcaaggcggcaacgaagaaaacctccagaacgacggtcgaa
gtatccaccagcactgccagcaagcgcgtgcggtcgacggcatcgaagacgaccgcgacc
acgacatccaaaaaggctgcagcgcccacgtccacggcctccaaatccacggcgttcaag
tccacaacatccaaatccacgtccaccgccacgtccacggacggcatcaccatcacccat
cccgagcgggtggtgtttcccgcagcgggcctcagcaagggcgatgtggccgactattac
cgcgcagtggcgccgctggtgctggcagagatcgcgcgccgccccttgtcgctgctgcgc
tgccccgatggtgccggcggcgactgcttcttccagaagcacgaaggccgccacctgggc
acgcatatcaaggcgatcccgctgcagcagaagagcggcaccgaggactacatctacgtc
gaggatgccgccggcctgctcgagctggtgcagatgaacacgctggaactgcatccctgg
ggcgcgcaggtcgacgatgcggagcatccggaccggctggtgttcgacctggaccccggc
gacggggtgtcctgggccgacgtggtggcggctgcgcgcgacatccgcgccaagctgcgc
agtgccggcctggagagcgcggtgcgcctgtccggcggcaagggcctgcacgtggtggtg
ccgatcgtgccggaagcggactgggagcaggcgcgcgatttctgcgaggccttcgcccag
gcgctggcaacgcacgcgccggaccgctacgtggccaccatgagcaaggccaagcgccac
ggcgtgatcttcgtcgactggctgcgcaatgggcgcggcaataccagcgtgtgttcgtgg
tcgctgcgcgcacgcgaaaaggccaccgtcgccgtgccgctgcgctgggaagaactcggc
aagatcagcggcccggacgccttcccgatggacaaggcactgcaaagggccaagcgtcag
cgtgcagatccctgggaatcggtgctggcgttgcagcaatacttgcccaccggcgacgac
aaccactaa
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