Xanthomonas sp. SS: HEP74_00313
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Entry
HEP74_00313 CDS
T09534
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
xas
Xanthomonas sp. SS
Brite
KEGG Orthology (KO) [BR:
xas00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xas03016
]
HEP74_00313
Enzymes [BR:
xas01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
HEP74_00313
Transfer RNA biogenesis [BR:
xas03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
HEP74_00313
Prokaryotic type
tRNA splicing ligases
HEP74_00313
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Hexapep
Gam
Motif
Other DBs
NCBI-ProteinID:
QNH15195
LinkDB
All DBs
Position
complement(355768..356988)
Genome browser
AA seq
406 aa
AA seq
DB search
MNMQNYELLHAEGSATPIKGWVRGVPLEAQAHEQLRNIAAIPFVGPWVAVMPDVHLGKGA
TVGSVIPTRGAIIPAAVGVDIGCGMAAVRTTLRAADLPDSLAQLRSSIERSVPVGNGRGG
EHRKLPDSIATRIAQSGLVERLDTIKARHRRIRTDKLDCQIGTLGGGNHFIEVCLDESDA
VWVMLHSGSRGTGNLIGSYFIEQAREQLAHRVLGFHLPDKDLAFFMEGEPLFDDYVEAVS
WAQDYARENREAMMARVLAEMRHRLPKFQLEKLAVNCHHNYVQKETHAGEELLVTRKGAV
SARAGELGIIPGSMGAKSFIVRGLGNGDSFHSCSHGAGRVMSRTAARQQITLAQHREATA
HVECRKDAAVIDESPAAYKSIDAVMAAQSDLVEVVHTLRQVLCVKG
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgaacatgcagaactatgaattgctgcacgccgagggcagtgccacgccgatcaagggc
tgggtgcgcggcgtgccgctggaagcgcaggcccacgagcagctgcgcaacatcgccgcg
atcccgttcgtgggaccgtgggtagcggtgatgccggacgtgcacctgggcaagggcgcg
accgtgggctcggtgatcccgacccgcggcgcgatcatcccggcggcggtcggcgtggac
atcggctgcggcatggccgcggtgcggaccacgctgcgcgcggccgatctgcccgacagc
ctggcgcaactgcgctccagcatcgagcgcagcgtgccggtcggcaacggccgcggcggc
gagcaccgcaagctgcccgacagcatcgccacgcgcatcgcgcagtcggggctggtcgag
cgcctggacacgatcaaggccaggcaccgccggatccgcaccgacaagctggactgccag
atcggcacgctcggcggcggcaaccacttcatcgaggtgtgcctggacgagagcgacgcg
gtgtgggtgatgctgcacagcggctcgcgcggcaccggcaacctgatcggcagctacttc
atcgagcaggcgcgcgagcagttggcgcaccgcgtgctcggcttccacctgccggacaag
gacctggcgttcttcatggaaggcgagccgttgttcgacgactacgtggaagcggtgtcc
tgggcgcaggactacgcccgcgagaaccgcgaggcgatgatggcgcgggtgctggcggag
atgcgccaccgcttgccgaagttccagttggagaagctggcggtgaattgccaccacaac
tacgtgcagaaggaaacgcacgccggcgaggaactgctggtgacgcgcaagggcgcggtc
agcgcgcgtgccggcgagctgggcatcattcccggcagcatgggcgcgaagagcttcatc
gtgcgcggcctgggcaatggcgacagcttccacagctgcagccacggcgccgggcgggtg
atgagccggaccgccgcgcgccagcagatcaccctggcccagcaccgcgaggccaccgcg
cacgtggagtgccgcaaggatgcggcggtgatcgacgagtcgccggcggcgtacaagtcg
atcgacgcggtgatggccgcgcaaagcgacctggtggaagtggtgcacacgctgcgtcag
gtgctgtgcgtgaagggctga
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