Xanthomonas sp. SS: HEP74_00553
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Entry
HEP74_00553 CDS
T09534
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
xas
Xanthomonas sp. SS
Pathway
xas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HEP74_00553 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xas03019
]
HEP74_00553 (rhlB)
Enzymes [BR:
xas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HEP74_00553 (rhlB)
Messenger RNA biogenesis [BR:
xas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HEP74_00553 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RhlB
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QNH15431
LinkDB
All DBs
Position
644045..645829
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AA seq
594 aa
AA seq
DB search
MMSDKPLTDVTFSAFELQPALLAGLEGAGFTRCTPIQALTLPVALPGRDVAGQAQTGTGK
TLAFLVTVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVY
GGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKD
IRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETESITAARVRQRIYFP
SDEEKLTLLLGLLSRSEGARTMVFVNTKAFVERVARSLERNGYRVGVLSGDVPQKKRETL
LNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAIS
FACERYAMSLPDIEAYIEQKIPVEPVTAELLVAMPRTPRAVVEGEAVEVDADADESIGDI
FREARAQREADEQRRGGGSSRGKPGGGRSGPGGGAGRSGEARGADGKPRRPRTPRPAEGD
AAATTVTAAPVAAEAEAVAAPVAAPVPKPVRAAADGAAAVDGERPPRKRRRRRGGRPLEG
AEGAAASVPTDAPAKPVQVRAARQGERAAAPAAAANDSFLTRLGRKLRSLVSSS
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atgatgagcgacaaaccgctgaccgatgtgactttttccgcgttcgagctgcaaccggcg
ctgctggccggcctcgaaggcgccggcttcacccgctgcacaccgatccaggcgctgacc
ctgccggtggccctgccgggccgcgacgtggccggccaggcccagaccggcaccggcaag
accctggcgttcctggtgacggtgatgaaccgcctgctcagccgcccggcgctggccgac
cgcaagcccgaggatccgcgcgcgctgatcctggccccgacccgcgaactggcgatccag
atccacaaggatgccgtgaagttcggcgccgacctgggcctgcgcttcgcgctggtctac
ggcggggtggactacgacaagcagcgcgagctgctgcagcagggcgtggacgtgatcatc
gccaccccggggcggctgatcgactacgtcaagcagcataaagtggtgtcgctgcacgcc
tgcgagatctgcgtgctcgacgaagccgaccgcatgttcgacctgggcttcatcaaggac
atccgcttcctgctgcggcgcatgcccgagcgcggcacccggcagaccctgctgttctcg
gccacgctcagccaccgcgtgctggaactggcctacgagcacatgaacgagccggaaaag
ctcgtggtcgagaccgagagcatcaccgccgcgcgcgtgcgccagcgcatctacttcccc
tccgacgaggagaagctgaccctgctgctgggtctgctatcgcgcagcgagggcgcgcgc
accatggtgttcgtcaacaccaaggccttcgtcgagcgcgtggcgcgttcgctggagcgc
aacggctaccgggtcggcgtgctgtccggcgacgtgccgcagaagaagcgcgagaccctg
ctcaaccgcttccagaagggccagctggagatcctggtcgccaccgacgtggccgcgcgc
ggcctgcacatcgatggcgtcaagtacgtctacaactacgacctgccgttcgacgccgag
gactacgtgcaccgcatcggccgcaccgcgcggctgggcgaggaaggcgacgcgatcagc
ttcgcctgcgagcgctatgcgatgagcctgccggacatcgaggcctacatcgagcagaag
atcccggtcgagccggtcaccgccgaactgctggtggcgatgccgcgcaccccgcgcgcg
gtggtcgagggcgaagcggtcgaggtcgacgcggatgccgacgagagcatcggcgacatc
ttccgtgaggcgcgtgcgcagcgcgaggccgacgagcagcggcgcggcggcggcagcagc
cgcggcaagcccggcggcggccgcagcggtcctggcggcggcgctggccgcagtggcgaa
gcgcgcggtgccgatggcaagccgcgacgtccgcgcaccccgcgcccggccgagggcgat
gccgcggcgacgacggtcacggcggcacccgtcgctgctgaagccgaagccgtcgcggct
ccggtcgccgcacccgtgccgaagccggtgcgcgcggctgccgatggcgcagccgccgtc
gatggcgagcgtccgccgcgcaagcgccgtcgccgccgtggcggccgtccgctcgagggt
gccgaaggcgcggcagcgtcggtgccgaccgacgcgccggccaagccggtgcaggtcagg
gccgcgcgccagggcgagcgcgccgcggcgccggccgccgcggccaacgattcgttcctg
acccgcctcggccgcaagctgcgttcgctggtctccagctcctga
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