Xanthomonas sp. SS: HEP74_00558
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Entry
HEP74_00558 CDS
T09534
Name
(GenBank) RNA polymerase sigma factor RpoH
KO
K03089
RNA polymerase sigma-32 factor
Organism
xas
Xanthomonas sp. SS
Brite
KEGG Orthology (KO) [BR:
xas00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xas03021
]
HEP74_00558
Transcription machinery [BR:
xas03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HEP74_00558
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
IF2_N
HTH_11
HTH_AsnC-type
KORA
HTH_3
HTH_10
Phage_terminase
GntR
UCR_14kD
HTH_25
Motif
Other DBs
NCBI-ProteinID:
QNH15436
LinkDB
All DBs
Position
649341..650228
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AA seq
295 aa
AA seq
DB search
MSPMSQTIPATALVANNLPIPSPLGSLDAYIGAVHQIPVLTSEEERALAVRYRDQEDLDA
ARELVHSHLRFVVHVARGYNGYGLPLGDLIQEGNIGLMKAVKRFDPEMGVRLVSFAVHWI
RAEMHEYILKNWRIVKVATTKAQRKLFFNLRKSKTRLGWMNAAEVTAVAKDLNVSEREVL
EMESRLSGRDIGFDAPSDDDDDHAPPSPAAYLMAAEEDPSQAYERADSEDNQLQLLREGL
AELDARSRDIIKRRWLDADSKITLQELADEYGVSAERIRQIEANALKKMKALFVA
NT seq
888 nt
NT seq
+upstream
nt +downstream
nt
atgagccctatgagccagaccatacctgccaccgcgctggtggccaacaacctcccgatc
cccagtccgctcggttcgctggatgcctatatcggcgccgtgcaccagatcccggtgctg
acgtccgaagaggaacgcgcgctggcggtgcgctaccgcgaccaggaagacctggatgcg
gcacgcgaactggtccattcccatctgcgcttcgtggttcacgtcgcccgcggctacaac
ggctacggcctgccgctgggcgacctgatccaggaaggcaacatcggcctgatgaaggcg
gtcaagcgcttcgacccggaaatgggcgtgcgcctggtcagcttcgcggtgcactggatc
cgtgccgagatgcacgagtacatcctgaagaactggcgcatcgtcaaggtcgccacgacc
aaggcgcagcgcaagctgttcttcaacctgcgcaagtccaagacccgcctgggctggatg
aacgcggcggaagtgaccgcggtcgccaaggacctcaacgtgtccgagcgcgaggtgctg
gagatggagtcgcgcctgtccggtcgcgacatcggtttcgatgcgccgtccgacgacgac
gacgaccacgcgccgccgtcgccggccgcttatctgatggccgccgaggaagatccctcg
caggcctacgagcgcgccgacagcgaggacaaccagctgcagctgctgcgcgaaggcctg
gccgaactggatgcgcgttcgcgcgacatcatcaagcgccgctggctggatgccgacagc
aagatcacgctgcaggagctggccgacgagtacggcgtgtccgccgagcgcatccgccag
atcgaagccaacgcgctgaagaagatgaaggcgctgttcgtggcgtaa
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