Xanthomonas sp. SS: HEP74_01133 Help Entry HEP74_01133       CDS       T09534                                  Name (GenBank) ATP-dependent RNA helicase HrpA   KO K03578   ATP-dependent RNA helicase HrpA [EC:5.6.2.6] Organism xas  Xanthomonas sp. SS Brite KEGG Orthology (KO) [BR:xas00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:xas03019]     HEP74_01133 Enzymes [BR:xas01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.6  RNA 3'-5' helicase      HEP74_01133 Messenger RNA biogenesis [BR:xas03019]  Prokaryotic type   Bacterial mRNA degradation factors    Other RNA degradation factors     Others      HEP74_01133 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  DUF3418 OB_NTP_bind Helicase_C HA2_C DEAD AAA_22 WHD_HA2 AAA_19 nSTAND3 AAA_30 NACHT nSTAND_NTPase5 SRP54 T2SSE AAA_25 TsaE ABC_tran AAA_23 PhoH Motif Other DBs NCBI-ProteinID:  QNH16008 LinkDB All DBs Position 1371148..1375371 Genome browser AA seq 1407 aa AA seqDB search MRCYSKFNGTRLMSTIEKHLATRLRERRDAIDGALTRDRGRLFGLWSRWQAAPGNPALEA AFEQALGQSRARCEARAAAAPAITLDEQLPIAREAERIVALIRAHQVVVIAGETGSGKTT QLPKLCLAAGRGAAGMIGCTQPRRIAARAVAARVAEELRTPVGGAVGFQVRFNDRVGEET RIKFMTDGILLAEIASDRWLSSYDTIIVDEAHERSLNIDFLLGYLKQLLRKRPELKVIVT SATIDTARFAEHFDGAPVISVEGRTFPVEVRYRPLEEPGLESGDSGLAEAREGQRSPRTA VATPDSRLPNPGLTVNDAIVAAVDEITRLDPRGDVLLFLPGEREIRDAHQALERRKYRET EVLPLYARLSNSDQDRVFNPGPRRRLVLATNVAETSLTVPRIRYVVDPGYARVKRYSPRQ KLDRLHIEPISQASANQRKGRCGRVAEGICYRLYAEADFQARPEFTDPEIRRSSLAGVIL RMLQLGLGRIEDFPFLEPPDERAVADGWQQLVELGAVGEPDRHGLRKLTEIGRKMARLPV DVKLARMLVAAQQHGCLRPMLVIAAFLGIQDPRERPPEAREAADNAHARFADARSEFVGI LRLWDGYRQAHEELTQSKLRDWCGRNFLGFLRMREWRELHRQLHLLCEELGWSEEPAAAS LLPLLAGAASPPPTRDAETNARTTRGQLHRAARLAREGRSEPAAVAPVAPAPAPPPVSET DDAPRASERERAAAYQALHRALLAGLPTQVGHRTEKGDFLAPRQRRFLLFPGSTLARKPP PWVLPATLLDTQKVWGMTNAAVEPDWVIAELPHLLARKHFDPHWSRAQGQVLASEQISLF GLVLAPKKPVHYGRIDPPGAHELFVRQGLVPGEINTRASFVADNQKVLAQAHEEEAKLRR AGIVADEDWQARWYLDRIPGEIHSAVGLDAWWKALPPEQRRALHWSLTDLLPGEGSEADR YPKYFALGDARLALHYKFEPGAADDGVTLEVPLHLLNALDAARLSWLAPGFVADKAAALI RSLPKALRRNYVPAPDFARAFYEAFPQPSADDMRGELARFLQRATGAALSALDFDESALE PHLRMNLRLRDDAGKVLAEARDLDALRARFGDRAGQAFAARAGREMAADGLREFPSAPIP LQVPGEAGVPAYPALVDEGEAAALRIFADRAQAEAAHPRGVRRLLEIALADKVKQARKQL PVSPKTGLLYAAIESQERLRGDLVDAALNALLEDGLDAIRDPGSFAQRRDAAGKQLFGEA MERLKLAEAIMGAAAELKPQLESPLMGWASGNLDDLRAQLAALVHPGFLRETPATALAQF PRYLRAMILRAERAKRDPARDQARMLELKPFVDALAAAAAAGRSADPQWQALRWDLEELR VSLFAQELGAKPGISAKKLAQRVTALR NT seq 4224 nt NT seq  +upstreamnt  +downstreamnt atgcgctgttattcaaagttcaacggcacccgattgatgagcactatcgaaaaacacctg gccacccgcctgcgcgagcgccgcgacgcgatcgacggggcgctgacccgcgaccgcggc cgcctgttcggcctatggtcgcgctggcaggccgcgcccggcaatcccgcattggaggca gcgttcgagcaggcgctgggccaatcgcgggcgcgctgcgaggcgcgtgcggcagcggcg ccggcgatcaccctggacgagcagttgccgatcgcgcgcgaggccgagcgcatcgtggcg ctgatccgcgcacaccaggtggtggtcatcgccggcgagaccggttcgggcaagaccacg cagctgccgaagctgtgcctggccgcaggccgcggcgccgccggcatgatcggctgcacc cagccgcggcgcatcgccgcgcgcgcggtggccgcgcgcgtggccgaggagctgcgcacg ccggtgggcggcgcggtgggcttccaggtgcgcttcaacgaccgggtcggcgaggagacc cggatcaagttcatgaccgacggcatcctgctggccgagatcgccagcgatcgctggctg tccagctacgacacgatcatcgtcgacgaggcgcacgagcgcagcctcaacatcgatttc ctgctcggctacctcaagcagctgctgcgcaagcgtccggagctgaaggtgatcgtgacc tcggcgacgatcgacaccgcgcgcttcgccgagcatttcgacggcgcgccggtgatcagc gtcgagggccgcacgttcccggtggaagtgcgctaccggccgctggaagagccgggattg gagagtggggattcgggattggcagaagcgcgagaaggccaacgttcgccgcgaacggcc gttgcgactcccgactcccgactccccaatcccggcctcaccgtcaacgatgcgatcgtg gcggcggtggacgagatcacccggctcgacccgcgcggcgacgtgttgctgttcctgccc ggcgagcgcgagatccgcgatgcgcaccaggcgctggagcggcgcaagtaccgcgagacc gaagtgctgccgctgtacgcgcggctgtccaacagcgaccaggaccgggtgttcaatccc ggcccgcggcggcgcctggtgctggccaccaacgtcgccgagacctcgctgacggtgccg cggatccgctacgtggtcgatcccggctatgcgcgggtcaagcgctacagccctcggcag aagctggaccggctgcacatcgaaccgatctcgcaggccagcgccaaccagcgcaagggc cgctgcgggcgcgtggccgagggcatctgctaccggctgtacgccgaggccgatttccag gcgcggccggagttcaccgatccggagatccgccgttccagcctggccggggtgatcctg cgcatgctgcaactgggcctggggcggatcgaggacttcccgttcctggagccgccggac gagcgcgcggtggccgacggctggcagcagctggtggaactgggcgcggtcggcgagccc gaccgccatgggctgcgcaagctgaccgagatcggccgcaagatggcgcggctgccggtg gacgtgaagctggcgcggatgctggtggccgcgcagcagcacggctgcctgcggccgatg ctggtgatcgccgcgttcctgggcatccaggacccgcgcgagcgcccgccggaagcgcgc gaggcggccgataacgcgcacgccaggttcgccgatgcgcgctcggaattcgtcggcatc ctgcgcctgtgggacggctaccggcaggcgcacgaggagttgacccagtccaagttgcgc gactggtgcgggcgcaacttcctcggtttcctgcgcatgcgcgaatggcgcgaactgcat cgccaactgcacctgctgtgcgaggaactgggctggagcgaggagccggcggcggcctcg ctgctgccgttgctggccggcgccgcgtcgccgccgcccacccgcgatgccgagaccaac gcgcgcaccacgcgtgggcaactgcatcgcgccgcgcggctggcgcgcgaagggcgcagc gagccggcggcggttgcgccagtcgctcccgcgcccgcgccgccacccgtcagcgaaacc gacgacgcgccacgtgccagcgagcgcgagcgcgccgccgcctaccaggcgctgcaccgc gcgctgctcgccggcctgccgacgcaggtcggccatcgcaccgagaagggcgatttcctg gcgccgcggcagcgccgcttcctgctgttccccggctccacgcttgcccgcaagccgccg ccgtgggtgctgccggccacgctgctggacacgcagaaggtgtggggcatgaccaacgcc gcggtcgagccggactgggtcatcgccgagctgccgcacctgctggcgcgcaagcatttc gacccgcattggtcgcgcgcgcaggggcaggtgctggcgtcggagcagatcagtctgttc gggctggtgctggcgccgaagaagccggtgcattacggccgcatcgacccgcccggcgcg cacgagctgttcgtgcgccagggcctggtgccgggcgagatcaacacccgtgccagtttc gtcgccgacaaccagaaagtgttggcgcaggcgcacgaggaagaagccaagctgcgccgc gccggcatcgtcgccgacgaggactggcaggcgcgctggtacctggaccggattcccggc gaaatccactcggccgtcggcctggacgcgtggtggaaggcgctgccgccggagcagcgg cgcgcgctgcactggtcgctgaccgatctgctgccgggcgaaggcagcgaggccgaccgc tatccgaagtatttcgcgctgggcgacgcgcggctggcgctgcattacaaattcgaaccc ggtgcggccgacgacggggtgaccctggaggtgccgctgcacctgctcaatgcgctggat gcggcgcggctgtcgtggctggcgccgggcttcgtcgccgacaaggccgcggcgctgatc cgcagcctgcccaaggcgttgcgccgcaactacgtgccggcgccggacttcgcccgcgcc ttctacgaggcgttcccgcagcccagcgccgacgacatgcgcggcgagctggcgcgcttc ctgcaacgtgccaccggcgcggcgctgagcgcgctggacttcgacgaaagcgcgctggaa ccacacctgcgcatgaacctgcgattgcgcgacgacgccggcaaggtgctggccgaagcg cgcgacctggacgcgttgcgcgcgcgcttcggcgaccgcgccgggcaggcgttcgccgcc cgcgccgggcgcgagatggccgcggacgggctgcgcgagttcccgtccgcgccgatcccg ctgcaggtaccgggcgaagcgggggtgccggcgtatccggcgctggtggacgaaggcgag gcggcggcgctgcgcatcttcgccgaccgtgcgcaggccgaggcggcgcatccgcgcggc gtgcgccgcttgctggaaattgcgctggccgacaaggtcaagcaggcgcgcaagcagctg ccggtgtcgccgaagaccgggctgctgtatgcggcgatcgagtcgcaggagcgcttgcgc ggcgatctggtcgatgcggcgttgaatgccttgctcgaagatggcctggatgcgatccgc gacccgggcagcttcgcccagcgccgcgatgccgccggcaagcagttgttcggcgaggcg atggagcggttgaagctggccgaggcgatcatgggcgcggcggcggaactgaaaccgcag ctggaatcgccgctgatgggctgggccagcggcaacctcgacgacctgcgcgcgcagctg gcggcgctggtgcatccgggcttcctgcgcgaaacgccggcgaccgcgctggcgcagttc ccgcgctacctgcgcgcgatgatcctgcgcgccgaacgcgccaagcgcgatccggcgcgc gaccaggcgcggatgctggaactcaagccgttcgtggatgcgctggccgctgccgccgcg gccgggcgcagcgccgacccgcagtggcaggcactgcgctgggacctggaggaattgcgc gtgtcgctgttcgcgcaggaactgggcgccaagccggggatctcggcgaagaagctggcg cagagagttacggcgttgaggtga

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