Xanthomonas sp. SS: HEP74_01939
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Entry
HEP74_01939 CDS
T09534
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
xas
Xanthomonas sp. SS
Pathway
xas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HEP74_01939 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xas03019
]
HEP74_01939 (rne)
03009 Ribosome biogenesis [BR:
xas03009
]
HEP74_01939 (rne)
Enzymes [BR:
xas01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HEP74_01939 (rne)
Messenger RNA biogenesis [BR:
xas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HEP74_01939 (rne)
Ribosome biogenesis [BR:
xas03009
]
Prokaryotic type
rRNA processing factors
HEP74_01939 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QNH16804
LinkDB
All DBs
Position
complement(2387636..2391238)
Genome browser
AA seq
1200 aa
AA seq
DB search
MKRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVEY
GGERHGFLPLKEISRDYFQAGVDHNKATIRELLREGQEVVVQVDKEERGNKGAALTTFIS
LAGRYMVLMPNSPSAGGVSRRIEGEDRAALKEALDKLNIPDDMGVIIRTAGVGRDAEELQ
WDLDYLLQVWKSIAEAALAKPAPFLIYQESRLIIRALRDYLRADIGEILVDTPEMYGDAQ
EFMQQVMPQSLRKLKHYTDDIPLFNRFQIESQIEAAYERSVRLPSGGSIVVDQTEALTAV
DVNSSRATKGSDIEDTAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASNKHQREVENR
LQNALKYDRARVQIGRISRFGLLEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESMSLS
IIRVAEEHAMKENTGQVLVQAPVEIANYLLNEKRRALSEIEKRHDAPIVIVADEQLHTPH
YEVTRLRENELGEESAKPSYQRNTPRKLPVHALTKAQLNIPAPAVTNVKHSQPAPVREVV
ETPEPVAAPVQVQAPAPAPVAAPATGVVGWLKRIFGAGESPAPAPTANEPAQRQRAHDGN
RNRNDRGDRNARRDGNRNGGQGGNAARGNGGNVRRDERRPGNGGGNAQGGQQNLAPKPPR
NEQAPQQAKPQQQNPQQQPKAPKQQQPQNPPRQPKPQQDPAQAALQGDKPQRQPRQDEVA
AKPVTAPAAATQDATTIAAAAVAGGAVALSGDAPASEANTTASAPVAAQPNPAPADVDER
ESAAETAQAVPVGENGDADDANGEAGGRRRRGRRGGRRRRRGNGEAGSGSEGAAFDDNDL
DAGDSDSDGETAPAPSRSQPEFDFDDDAASAEVAEAKPQQAPRPPREKREPRQPRHEQTA
NAPTPVAAAASVVPQAEGETAPAQQAAPAAATAAPQTEDGTAQVQAAPVAAAAAIATAPS
VAETAVVDAAPVATAQAETVAPVVAAPLPPVVAEAPAARSEAVPAAEPAASIVTKSAASE
AAPPETIEDALQPTPAPIVEQPVPVATTKRDAGMETVAASAAPVEEPVTASTTDSKPQQD
ATTTQQSLAGEEAPSKPAYVPVQTTLLDVFHEEQPAAAVAPTPVHTPVAAAPVSDSAESR
HVGDAEPAPAAAAAAGNGLFDAPPAAPADAPVSVAQHQPHASKSGESENDDDKEHKDRAS
NT seq
3603 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgaatgctgatcaacgccacgcaggcggaagaactgcgtgtggccatcgtggac
ggccagaccctgtacgacatcgacatcgaacagccgtccaaggaacagaagaagtccaac
atctacaagggccggatcacgcggctcgaaccctcgctcgaagccgccttcgtcgaatac
ggcggcgagcgccacggcttcctgccgctgaaggaaatctcccgcgactacttccaggcc
ggcgtcgaccacaacaaggcgacgatccgcgaactgctgcgcgagggccaggaggtcgtt
gtccaggtggacaaggaagaacgcggcaacaagggcgccgcgctgaccacgttcatctcg
ttggccggccgctacatggtgctgatgccgaactcgcccagcgccggcggcgtctcgcgc
cggatcgagggcgaggaccgcgctgcgctgaaggaagcgctggacaagctgaacatcccc
gacgacatgggcgtgatcatccgcaccgccggcgtcggtcgcgatgccgaagagctgcag
tgggacctggactacctgctgcaggtgtggaagtcgatcgccgaggccgcactggccaag
ccggcgccgttcctgatctaccaggaatcgcgactgatcatccgcgccctgcgcgactac
ctgcgcgccgacatcggcgagattctggtcgacacccccgagatgtacggcgatgcccag
gagttcatgcagcaggtgatgccgcagagcctgcgcaagctcaagcactacaccgacgac
atcccgctgttcaaccgcttccagatcgaatcgcagatcgaggcggcctacgagcgcagc
gtgcgcctgccctccggcggctcgatcgtggtcgaccagaccgaagcgctgaccgcggtg
gacgtcaactcctcgcgcgcgaccaagggcagcgacatcgaggacaccgcgttccagacc
aacctggaggcggccgaagaggtcgcccgccagctgcgcctgcgcgacctcggcggcctg
gtggtcatcgacttcatcgacatggcctccaacaagcaccagcgcgaagtcgagaaccgc
ctgcagaacgcgctcaagtacgaccgtgcgcgggtgcagatcggccgcatctcgcgcttc
ggcctgctcgagatgagccgccagcgcctgcgtccgtcgctgggcgagtccagccagatc
gtctgcccgcgttgcgacggccatggccgcatgcgcagcgtcgagtcgatgtcgctgtcg
atcatccgcgtcgccgaagagcatgcgatgaaggagaacaccggacaggtgctggtgcag
gccccggtggagatcgccaactacctgctcaatgagaagcgccgcgcgctcagcgagatc
gagaagcgccatgacgcgccgatcgtcatcgtcgccgacgagcaactgcacaccccgcac
tacgaagtgacccgcctgcgcgagaacgagcttggcgaggaaagcgccaagcccagctac
cagcgcaacaccccgcgcaagctgccggtgcatgcgctgaccaaggcgcagctgaacatt
ccggcgccggcggtgaccaacgtgaagcactcgcagccggccccggtgcgcgaagtggtc
gagacgcccgaaccggtcgctgcgcccgtgcaggtccaggccccggcccccgccccggtc
gcggctccggccaccggcgtggtcggctggctgaagcggatcttcggtgctggcgaaagc
ccggccccggcgccgaccgcgaacgaaccggcgcagcgtcaacgcgcccatgacggcaac
cgcaatcgcaacgaccgcggcgaccgcaacgcgcgtcgcgacggcaaccgcaacggcggc
cagggcggcaatgccgcacgtggcaacggcggcaacgtgcgccgcgacgagcgtcgtccg
ggtaacggcggcggcaacgcgcagggcggccagcagaacctcgcgcccaagccgccgcgc
aacgagcaggcgccgcagcaggccaagccgcagcagcagaacccgcagcagcagccgaag
gcgccgaagcagcagcaaccgcagaacccgccgcgccagcccaagccgcagcaggatccg
gcccaggccgcgctgcagggcgacaagccgcagcgccagccgcgccaggacgaggtcgcg
gccaagcccgtcaccgcacctgccgctgcgacgcaggacgccaccacgatcgcggccgct
gccgtggccggcggtgccgtcgcgctgagcggcgatgcgccggccagcgaggccaacacc
acggcctcggccccggttgcggcgcagccgaacccggcaccggcagacgtcgatgagcgc
gagagcgccgcggaaaccgcgcaggcggtgccggtcggcgagaacggcgacgccgacgac
gccaatggcgaggccggtggccgccgccgtcgtggccgtcgtggcggccgtcgccgtcgt
cgcggcaatggcgaagccggcagcggcagcgagggtgcagcgttcgacgacaacgacctg
gatgccggcgacagcgacagcgacggcgaaaccgcgccggcgccgagccgcagccagccg
gagttcgacttcgacgacgacgcagcgtccgccgaggtcgccgaggccaagccgcagcaa
gcgccgcgtccgccgcgggagaagcgcgagccgcgccagccgcggcacgagcagaccgct
aacgccccgacgccggtcgccgcagctgcaagcgtggtgccgcaggccgagggcgagacc
gcgccggcgcagcaggccgcaccggcagccgcaaccgcagcgccgcagaccgaggacggc
actgcgcaagtgcaggccgcgccggtggccgcagccgcagcgatcgcaaccgcgccttcc
gttgccgaaacggcagtggtcgatgcggcaccggtggccaccgcgcaggcggaaacggtg
gcgccggtagtggcagcaccgctgccgcccgtcgtcgccgaggcgccagcggcgcgttcc
gaggcagtgcctgccgcggagcctgctgcgtcgatcgtcaccaagtcggccgcttccgaa
gcggcaccgccggagaccatcgaggacgcactgcagccgacaccggcgccgatcgtcgag
cagcccgtcccggtcgccacgaccaagcgcgacgccggaatggaaaccgttgcagcgtcg
gccgcgccggtcgaggagccggtcacggcatccacgacggacagcaagccgcagcaggac
gccacgacgacgcagcaatcgctcgccggggaagaagcgcccagcaagccggcctacgtg
ccggtgcagaccacgctgctggacgtcttccatgaagagcagccggccgctgcggtcgca
ccgacgccggtgcacacgccagtcgctgccgcgccggtgtcggacagcgccgaaagccgc
cacgtcggcgatgccgaaccggcacctgcagctgccgctgccgctggcaacggcctgttc
gatgcgccgcccgccgctccggcggacgcaccggtcagcgtcgcccagcaccagccgcat
gccagcaagtccggcgaaagcgaaaacgacgacgacaaggagcacaaggaccgcgccagc
tga
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