Xanthomonas sp. SS: HEP74_03558
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Entry
HEP74_03558 CDS
T09534
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
xas
Xanthomonas sp. SS
Pathway
xas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HEP74_03558
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xas03019
]
HEP74_03558
Enzymes [BR:
xas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HEP74_03558
Messenger RNA biogenesis [BR:
xas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HEP74_03558
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Sigma70_r4_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QNH18386
LinkDB
All DBs
Position
4293556..4294914
Genome browser
AA seq
452 aa
AA seq
DB search
MSFESLGLAPFLLRALAEQGYETPTPIQLQAIPLALAGHDLMAGAQTGTGKTAAFGLPLL
QHLGTSPQPVGNGARRPRALILTPTRELATQVHDSLRGYSKYLRIPSTTIYGGVGMGNQL
DALRRGVDLLIACPGRLLDHLERRSVDLSGIEILVLDEADRMLDMGFLPSIKRILAKLPK
QNRQTLLFSATFEEGIKQLAREFMHNPQEIQATPSNTVADTITHRVHPVDGTRKRELLLH
LLAADSRMQTLVFARTKHGADKLTMFLDKSGLKTAAIHGNKSQGQRLRALSDFKAGRITV
LVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSQGEAVSLVAQDEAKLLR
AISRMLKREMDIRDVPGFEPSTPIRWGNNNPADERPGGQRPPRKSTHARRPHGDAPRPHA
HAGAKPAGGTQPGGARRQGERRRSGGQPSAAR
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcgaatccttgggcctggcgcccttcctgctgcgtgcgttggccgagcagggc
tatgaaacccccaccccgatccagttgcaggcgattccgctggcgctggccggccacgac
ctgatggccggcgcgcagaccggtaccggcaagaccgccgcgttcggcctgccgctgctg
cagcacctgggcacctcgccgcagccggtcggcaatggcgcacgcaggccgcgcgcgctg
atcctgaccccgacccgcgagctggccacccaggtgcacgacagcctgcgcggctacagc
aagtacctgcgcatccccagcaccaccatctacggcggcgtcggcatgggcaaccagctc
gacgcgctgcgtcgcggcgtggacctgctgatcgcctgcccgggccgcctgctcgatcac
ctcgagcgccgcagcgtggacctgtcgggcatcgagatcctggtgctggacgaagccgac
cgcatgctcgacatgggcttcctgccctcgatcaagcgcatcctggccaagctgcccaag
cagaaccggcagaccctgctgttctcggcgaccttcgaggaaggcatcaagcagctggcc
cgcgagttcatgcacaacccgcaggaaatccaggccacgccgagcaacaccgtcgccgac
accatcacccaccgcgtgcacccggtcgatggcacccgcaagcgcgagctgctgctgcac
ctgctggccgccgattcgcgcatgcagacgctggtgttcgcgcgcaccaagcacggcgcc
gacaagctgaccatgttcctggacaagtccgggctgaagaccgccgcgatccacggcaac
aagagccagggccagcgcctgcgcgcgctgagcgacttcaaggccggccgcatcaccgtg
ctggtggcgaccgacatcgccgcgcgcggcatcgacatcgaccagctgccgaaggtcatc
aactacgacctgccgatggtcgccgaggactacgtgcaccggatcggccgcaccggccgc
aacggctcgcagggcgaggctgtgtcgctggtggcgcaggacgaggccaagctgctgcgt
gcgatctcgcgcatgctcaagcgcgagatggacatccgcgacgtgccgggcttcgagccg
tccacgccgatccgctggggcaacaacaatccggccgacgagcgtccgggcggccagcgt
ccgccgcgcaagagcacccacgcacggcgtccgcacggcgacgcgccgcgcccgcacgcg
catgccggggccaagccggccggcggcactcagccgggcggcgcacgccgccagggcgag
cgtcgtcgcagcggcggccagcccagcgccgcgcgctaa
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