Xanthobacter autotrophicus: Xaut_3365
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Entry
Xaut_3365 CDS
T00581
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
xau
Xanthobacter autotrophicus
Pathway
xau03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xau00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Xaut_3365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xau03021
]
Xaut_3365
03400 DNA repair and recombination proteins [BR:
xau03400
]
Xaut_3365
Enzymes [BR:
xau01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Xaut_3365
Transcription machinery [BR:
xau03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Xaut_3365
DNA repair and recombination proteins [BR:
xau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Xaut_3365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
RnfC_N
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
ABS68594
UniProt:
A7IKQ1
LinkDB
All DBs
Position
3748098..3752282
Genome browser
AA seq
1394 aa
AA seq
DB search
MNQEVLNVFNPTVPAPAFNQIRITIASPDKIKSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGLLLDMTLKDLERILYFEYFVVIEPGTTKLKYRQLLSEDEYLRAQDEFGETNFTA
MIGAEAIREILRGMDLDKIAADLRVEIAEATTELKPKKLAKRLKIVEAFQQSGNKPEWMI
LTHVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PELKLHQCGLPKKMALELFKPFIYSRLDAKGHSATVKQAKKLVEKERPEVWDILDEVIRE
HPVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGQPIIVPSQDIVLGLYYLSIMKEKEPGEGMMFANMAEIDHALN
AKAITLATKIRGRYNGVDAEGKPYSKIYETSPGRMKIGELLPKHPKLSYDVVNKLMTKKE
ISNMIDAVYRHCGQKESVIFCDRIMALGFYNAFRAGISFGKDDMVVPKKKWDLVEETRAL
TKEYEQQYNDGLITQGEKYNKVVDAWGKCSDRVAEEMMKEISSVKKDPKTGREKQINSIY
MMSHSGARGSPAQMKQLAGMRGLMAKPSGEIIESPIISNFKEGLTVMEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDSIITERDCGSEKGIHMRAIIDAGQVVASLASRVLGRT
AAEDIVEPATGNVIVPRGTMIEEWHVERINKSGIQEIKIRSVLTCETRNGVCGTCYGRDL
ARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGAATLADSSYVESNFEGIVRIRNRN
VARNSEGDLVVMARNLAVVIVDVDGTERAVNRVQYGARLKVDEGDTIKRGQRIAEWDPYT
RPILSEVDGIVAFEDLTEGSSMNETVDESTGIAKRVVTDSRSGRGPELRPAILIKGKDGK
IIKLPRGGDARYALPVEAIISVDPNQTLKAGDAVARVPMESAKTRDITGGLPRVAELFEA
RRPKDAAIIAEISGTIRFGRDYKNKRRLSIEPADGGDAVEYLIPKGKHIHLQDGDVVEKG
DFIVDGNPAPHDILAIKGVEELAAFLVNEIQEVYRLQGVHINDKHIEVIVRNMLQKVEID
DSGETDFLDGEQVDRIEFIEANEKAAEEAKKPATGHPVLLGITKASLQTRSFFSAASFQE
TTRVLTEAAVNGKVDPLEGLKENVIVGRLIPAGTGAQMARLRTIANSRDDLIVATRDEQS
EGQPLVQGPADAAE
NT seq
4185 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaagtcctgaacgtcttcaatccgaccgttccggccccggccttcaaccag
atccgcatcaccattgcgagcccggacaagatcaagtcctggtcgtacggcgagatcaag
aagccggaaaccatcaactaccgtacgttcaagcccgagcgtgacggcctgttctgcgcg
cgcatcttcggtcccatcaaggactacgagtgcctgtgcggcaagtacaagcggatgaag
tacaagggcatcatctgcgagaagtgcggcgtcgaggtcaccttgtcgcgcgtgcgccgc
gagcgcatgggccacatcgagcttgcggccccggtggcgcacatctggttcctgaagtcc
ctgccgagccgcatcggccttctgctcgacatgacgctgaaggacctcgagcggatcctg
tacttcgaatatttcgtcgtcatcgagccgggcaccaccaagctcaagtaccgtcagctc
ctctccgaggacgagtacctgcgcgcccaggacgaattcggcgagaccaacttcaccgcc
atgatcggtgccgaggcgatccgcgagatcctgcgcggcatggatctggacaagatcgcc
gccgacctgcgggtggagatcgccgaggccaccaccgagctgaagcccaagaagctcgcc
aagcgcctgaagatcgtcgaggccttccagcagtccggcaacaagccggagtggatgatc
ctcacccacgtcccggtcatcccgccggacctgcgtccgctggtgcccctcgacggcggc
cgcttcgcgacctccgacctcaacgacctctaccgccgcgtcatcaaccgcaacaaccgc
ctgaagcggctgatcgagctgcgcgcgccggacatcatcatccgcaacgagaagcgtatg
cttcaggaggcggtggatgcgctgttcgacaacggccgccgtggccgcgtcatcacgggc
gccaacaagcgcccgctgaagtcgcttgccgacatgctgaagggcaagcagggccggttc
cgccagaacctgctcggcaagcgcgtggactattccggccgttcggtgatcgtggtgggt
cccgagctgaagctgcaccagtgcggcctgcccaagaagatggcgctggagctgttcaag
cccttcatctattcgcgcctcgacgccaagggccattcggccacggtgaaacaggccaag
aagctggtggagaaggagcgtcccgaggtgtgggacatcctcgacgaagtgatccgcgag
cacccggtgatgctgaaccgcgcgccgacgctccaccgcctcggcatccaggcgttcgag
ccggtgctcatcgagggcaaggcgatccagctgcatccgctggtctgctcggccttcaac
gccgacttcgacggtgaccagatggccgtccacgtcccgctctcgctggaagcccagctg
gaagcgcgcgtgctgatgatgtccaccaacaacatcctgcacccggcgaacggccagccc
atcatcgtgccgtcgcaggacatcgtgctcggcctctactacctctccatcatgaaggag
aaggagccgggcgagggcatgatgttcgccaacatggcggagatcgaccacgcgctgaac
gccaaggcgatcaccctcgccaccaagatccgcggccgctacaatggcgtggacgcggag
ggcaagccgtattccaagatctatgagacctcgcccggccgcatgaagatcggcgagctg
ctgcccaagcacccgaagctgtcctacgacgtcgtcaacaagctgatgacgaagaaggaa
atctccaacatgatcgatgccgtgtaccggcactgcggtcagaaggagagcgtgatcttc
tgcgaccgcatcatggcgctcggcttctacaacgcgttccgagccggcatctcgttcggc
aaggacgacatggtggtgccgaagaagaagtgggacctggtggaggagacgcgcgccctc
accaaggaatacgagcagcagtacaatgacggcctgattacccagggcgagaagtacaac
aaggtcgttgacgcctggggcaagtgctccgatcgggtcgctgaggagatgatgaaggaa
atctcttcggtgaagaaggacccgaagaccggccgcgagaagcagatcaactcgatctac
atgatgagccactccggagcgcgtgggtcgcccgctcagatgaagcagcttgccggcatg
cgcggcctcatggccaagccgtcgggcgagatcatcgagagcccgatcatctcgaacttc
aaggaaggcctgaccgtgatggagtacttcaactccacccacggcgcgcgtaagggcctt
gccgacaccgctctgaagaccgccaactcgggttacctcacccgccgcctcgtggacgtg
gcgcaggattccatcatcaccgagcgcgattgcggctcggagaaggggatccacatgcgc
gccatcatcgacgcgggccaggtggtggcctcgctcgcctcgcgcgtcctcggccgcacc
gcggcggaagacatcgtggagccggccaccggcaacgtcatcgtgccccgcggcaccatg
atcgaggaatggcacgtcgagcggatcaacaagtccggcatccaggagatcaagatccgc
tcggtcttgacctgcgagacccggaacggcgtgtgcggcacctgctacgggcgcgacctt
gcccgcggcaccccggtgaacatgggcgaggcggtgggcgtcatcgccgcccagtccatc
ggcgagccgggcacccagctcaccatgcgcaccttccacatcggcggcgcggcgaccctt
gccgacagctcctatgtggaaagcaacttcgagggcatcgtccgcatccgcaaccgcaac
gtggcgcggaactcggaaggcgacctcgtggtcatggcccgcaacctggcggtggtcatc
gtcgacgtggacggcaccgagcgcgcggtcaaccgcgtgcagtacggcgcccgcctcaag
gtggacgagggcgacaccatcaagcgcggccagcgcatcgccgagtgggacccctacacc
cgtcccatcctgtccgaggtggacggcatcgtggccttcgaggacctcaccgaaggctcc
tccatgaacgagacggtcgacgagtcgaccggcatcgccaagcgcgtggtgacggattcg
cggtccggccgtgggccggagctgcgtcccgccatcctgatcaagggcaaggacggcaag
atcatcaagctgccccgcggcggcgatgcccgttacgccctgccggtggaggccatcatc
tcggtggacccgaaccagaccctcaaggccggcgacgcggtggcccgcgtgcccatggaa
agcgccaagacccgcgacatcacgggcggtctgccgcgcgtggcggagctgttcgaggcc
cggcgtcccaaggatgcggcgatcatcgccgagatctcgggcaccatccgcttcggccgc
gactacaagaacaagcgccggctctccatcgagccggcggacggcggggatgcggtcgaa
tacctgatcccgaagggcaagcacatccatctccaggacggcgacgtggtggagaagggc
gacttcatcgtcgacggcaacccggcgccgcacgacatcctggcgatcaagggcgtggaa
gagcttgccgccttcctcgtcaacgagatccaggaggtctaccggctccagggcgtgcac
atcaacgacaagcacatcgaagtgattgtccggaacatgctgcagaaggtcgagatcgac
gacagcggcgagaccgacttcctggacggcgagcaggtggaccgcatcgagttcatcgag
gcgaacgagaaggctgcggaagaggcaaagaagcccgccaccggccatcccgtgctgctg
ggcattaccaaggcctcgctgcagacgcgctccttcttctcggcggcctcgttccaggag
accacccgcgtcctcaccgaggcggcggtcaacggcaaggtggatccgctggaaggcctg
aaggagaacgtcatcgtcggccgtctcatcccggccggcaccggcgcccagatggcgcgc
ctgcgcaccatcgccaacagccgcgacgacctcatcgtcgcgacccgcgacgagcagagc
gaaggccagcccctggtgcagggccccgccgacgcggcggagtga
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integrated database retrieval system
