Xanthobacter autotrophicus: Xaut_4262
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Entry
Xaut_4262 CDS
T00581
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
xau
Xanthobacter autotrophicus
Pathway
xau03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
xau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Xaut_4262
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xau03400
]
Xaut_4262
Enzymes [BR:
xau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Xaut_4262
DNA repair and recombination proteins [BR:
xau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Xaut_4262
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
UvrB_inter
ResIII
MFD_D3
Cas3-like_C_2
SecA_DEAD
RecG_dom3_C
AAA_25
Motif
Other DBs
NCBI-ProteinID:
ABS69483
UniProt:
A7IN89
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All DBs
Position
4727244..4730750
Genome browser
AA seq
1168 aa
AA seq
DB search
MKRPQLLADALAEGRPLILSRVADGMEGMVVADLARSLAGRKNAPWPSLTVICRDGQRMA
AVERGLAFFAPELEVLSFPSWDCLPYDRASPNASIVARRMATLAKLARIKGGNASVLLTT
VNATVQRVPAKGLVAAQSLVAAPGNTIDLEGVTQWAEQNGFLRTSTVRDTGEYAVRGGLI
DLFPPGLDAPIRLDFFGDTLETIRAFDPETQRTTGQVRSLDLVPMAEFQLTTETMRRFRM
AYVAEFGAARKGDTLYEAVSEGRRHAGMEHWLPLFHERMDTLFDYLEGGTLLLDPLAEEA
GGERIAQIADYYDARKGGQELGGGTIYNPLPADRLYLSGPEWNKRLARHSLARLSPFAAP
EGGDNRVIDLGGVQGRSFAAERAEPEANVFDAAIAHVRELQKSRKVILAGWSEGSRERLG
TVLADHGLKGLAAISRFDSLAALPKTQAALAVFGLEAGFETPDFAVIGEQDILGDRLVRP
KRKARRPQDVLTELTALTAGDLVVHVDHGIGRFIGLKTVEAMGAPHDCLEIHYAGGDKLF
LPVENLELLSRYGSEDTEAQLDKLGGGAWQARKARMKKRIREMASELIKIAAQRQLGEAP
KLVPAMGLYDEFRARFPYEETDDQDAAIDAVLDDLASGHPMDRLICGDVGFGKTEVALRA
AFAVALSGKQVAVVVPTTLLARQHFKTFSERFKGLPVNVAQASRMVTGKDLTAVKKGIAD
GTVDIVVGTHALLGKAISFKDLGLVIVDEEQHFGVSHKERLKQLRAEVHVLTLTATPIPR
TLQLAMTGVRELSIIATPPVDRLAVRTFITPFDPLVVREALLRERYRGGQSFYVVPRIED
LAEVREFLAASVPEVKVAVAHGQLAAGALEDIMTAFYDGQYDVLLSTTIVESGLDVPNAN
TLIVHRADMFGLAQLYQLRGRVGRAKARAYAIFTVPATKPMTVQAERRLKVLQSLETLGA
GFQLASHDLDIRGAGNLLGDEQSGHIKEVGYELYQEMLQEAIAHLKAGITDYVDDKWSPN
ITIGMPVLIPEDYVADLHVRLALYRRLADIQDDGEIDAFGAELVDRFGPTPEEVGQLLKL
TQIKALARKANVEKVDAGPKGVVLGFRDNEFADPSGLVKLIGQEGNQAKVRPDFKVVFLR
DWPTAEARLKGTLVVLKKLAALASKKAL
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
gtgaagcgtccccagctccttgccgatgcgctggccgaaggccggccgctcatcctctcc
cgcgtcgcggacggcatggagggcatggtggtggcggacctcgcccgctccctggctggg
cgcaagaacgcaccatggccgagcctcaccgtcatttgccgggacggccagcgtatggcg
gccgtggagcggggccttgccttcttcgcgccggagctggaggtgctgagcttcccctcg
tgggattgcctgccctacgaccgcgcctcgcccaacgcctccatcgtggccaggcgcatg
gcgacgctggcgaagctcgcccgcatcaagggcggcaatgccagcgtgctgctcaccacc
gtgaacgccacggtgcagcgggtgccggccaaggggctggtggcggcgcagtcgctggtg
gccgcgccgggcaataccatcgaccttgagggcgtgacccaatgggccgagcagaacggc
ttcctgcgcacctccaccgtgcgcgacaccggcgaatatgcggtacgcggcggcctcatc
gacctgttcccgccggggctcgacgcgcccatccgcctcgatttcttcggcgacacgctg
gagaccatccgcgccttcgatcccgagacccagcgcaccaccggtcaggtccgctcgctg
gatctggtgcccatggccgagttccagctgaccaccgaaaccatgcgccgcttccgcatg
gcctatgtggccgagttcggcgccgctcggaagggcgacaccctctatgaggcggtgagc
gaaggccgccgccacgccggcatggaacattggctgcccctgttccacgagcgcatggac
acgctgttcgactacctggaaggcggcacgctgctgctcgacccgctggcggaagaggcc
ggtggcgagcgcatcgcccagatcgccgattattatgacgcccgaaagggcgggcaggag
ctgggcggcggcaccatctacaatcccctgccggcggaccggctctatctctccggcccg
gaatggaacaagcggctggcccgccacagcctcgcccggctcagccccttcgccgcgccg
gaggggggcgataaccgcgtcatcgatctcggcggcgtgcagggccgctccttcgccgcc
gagcgggcggagccggaggccaatgtcttcgatgccgccatcgcccatgttcgcgagctg
cagaagtccaggaaggtgatcctcgccggctggtccgagggctcgcgggagcggctgggc
acggtgctggccgaccacgggctgaagggtctcgccgccatctcccgcttcgacagcctc
gccgccttgcccaagacccaggcggcactggccgtgttcgggctggaggcggggttcgag
acgccggacttcgccgtcatcggcgagcaggacatcctcggcgaccggctggtgcgcccc
aagcgcaaggcccgccgcccgcaggacgtgctcacggagctgaccgcgctcaccgccggc
gacctcgtggtgcatgtggaccacggcatcggccgcttcatcggcctgaagaccgtggag
gccatgggcgccccgcacgactgcctggagatccactacgccggcggggacaagctgttc
ctgccggtggaaaatctcgaactcctgagccgctacggctcggaggacaccgaggcacag
ctggacaagctgggcggcggcgcgtggcaggcacgcaaggcgcggatgaagaagcgcatc
cgcgagatggcgtccgaactcatcaagatcgccgcacagcgccagcttggcgaggcgccc
aagctggtgccggccatgggcctctacgacgagttccgcgcccgcttcccctatgaggag
accgacgaccaggacgccgccatcgacgcggtgctggacgacctcgcctccggccatccc
atggaccggctgatctgcggcgacgtgggcttcggcaagaccgaggtggccctgcgcgcc
gccttcgcggtggcgctctccggcaagcaggtggcggtggtggtgcccaccacgctgctc
gcccgccagcatttcaagaccttctccgagcgcttcaagggcctgccggtgaacgtggcc
caggcctcgcgcatggtgacgggcaaggacctcaccgccgtgaagaagggcatcgccgac
ggcacggtggacatcgtggtgggcacccacgccttgctcggcaaggccatcagcttcaag
gacctcggcctcgtcatcgtggacgaggagcagcatttcggcgtctcccacaaggagcgg
ctgaagcagctgcgcgccgaggtgcatgtgctgaccctcaccgctacccccatcccccgc
accctgcagctggccatgacgggtgtgcgcgaactctccatcatcgccacgcctccggtg
gaccgcctcgcggtgcgcaccttcatcacgccgttcgatccgctggtggtgcgcgaggcg
ctgctgcgcgagcgctatcgcggcggccagagcttctatgtggtgccgcgcatcgaggat
cttgcggaggtgcgcgagttcctggccgcgtccgtgcccgaggtgaaggtggcggtggcc
cacggccaactcgccgccggcgcgctcgaagacatcatgaccgccttctacgacggccag
tacgacgtgctgctctccaccaccatcgtggaatcgggcctcgacgtgcccaatgccaat
acgctgatcgtgcaccgggccgacatgttcggcctcgcccagctctaccagttgcgcggc
cgcgtgggccgggccaaggcgcgggcctatgccatcttcaccgtgccggcgaccaagccc
atgacggtgcaggcggaacgccgcctcaaggtgctgcaatcgctggagacgctgggcgcc
ggcttccagctggcgagccacgacctcgacatccgcggcgccggcaatctgctgggcgac
gagcagtccggccacatcaaggaagtgggttacgagctgtaccaggagatgctccaggag
gcgatcgcccacctcaaggccggcatcaccgactatgtggacgacaagtggtcgcccaac
atcaccatcggcatgccggtgctgattcccgaggactatgtggccgacctccacgtgcgc
ctcgccctctaccgccgcctcgcggacatccaggacgacggcgagatcgacgccttcggg
gcggaactggtggaccgcttcggccccacgccggaggaggtgggccagcttctgaagctc
acccagatcaaggcgctggcccgcaaggccaatgtggagaaggtggatgccggccccaag
ggcgtggtcctgggcttccgtgacaatgagttcgccgacccctcgggcctggtgaagctc
atcgggcaggagggtaaccaggccaaggtgcggcccgacttcaaggtggtgttcctgcgc
gactggcccaccgccgaggcccggttgaagggcacgctggtggtgctgaagaagctcgcc
gcgctggccagcaagaaggcgctctga
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