Xanthomonas euvesicatoria pv. citrumelo F1: XACM_1536
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Entry
XACM_1536 CDS
T01616
Symbol
vacB
Name
(GenBank) RNase R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
xax
Xanthomonas euvesicatoria pv. citrumelo F1
Pathway
xax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XACM_1536 (vacB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xax03019
]
XACM_1536 (vacB)
03016 Transfer RNA biogenesis [BR:
xax03016
]
XACM_1536 (vacB)
Enzymes [BR:
xax01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
XACM_1536 (vacB)
Messenger RNA biogenesis [BR:
xax03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
XACM_1536 (vacB)
Transfer RNA biogenesis [BR:
xax03016
]
Prokaryotic type
tRNA degradation factors
XACM_1536 (vacB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_11
RNase_II_C_S1
HTH_20
HTH_24
Motif
Other DBs
NCBI-ProteinID:
AEO41817
LinkDB
All DBs
Position
1730774..1733302
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AA seq
842 aa
AA seq
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MTKKKTPDSDRPSRRKSTGAGDSSTAEQQKLPGWMPDFLVRAAAGASTKSANKRAADKAS
NPSKASSQPAAAPPAPRAPHPRKSGPSAPPPERFQTTAPATAEFKDPHAEREALRYAEPI
ASREAILQLLEACDGPQTAEEIAEQLNLSDRIDALGKRLAAMVREAQLVQNRRGGYAPVQ
QTSLIAGVVIANPEGFGFLKPDEGGDDLFLPPFEMRKVMHGDRALANVTGIDRRGRREGA
IARVLERGMSRMLGRFFYEHGVAYVDPDDKRIQRNVQIAPDGIGEAREGQLVVCELIAPP
DARRPAIGKIIAVLGDKLTPSLVVEMAIHGHELPHEFPQEVLDEAAAVPLVVEPQMIGGR
VDLRQMPLVTIDGEDAKDFDDAVYCEPNADGFRLVVAIADVSNYVRPGTPLDDEAQKRAT
SVYFPGFVVPMLPETLSNGICSLMPKVDRMCFVCDMQVGRDGEVTGSRFYEAVMNSHARL
TYNQVWKAVGEDDADTKAFIGPLLPQVQRLHQLYHVLSKARTQRGAIEFETSEVRFVLDN
TGEVTQAGMLVRNDAHKLIEECMIAANVEAARYLLSVHVPAPYRVHERPPESKYEDLLEF
LKEFQLSLPAWSKVRPGDYTKLLKKVRARPDAALLESVLLRSQSLAVYSPENNGHFGLAL
EAYAHFTSPIRRYPDLLVHRAIKHALTGASPQTFIYTPRQMAALALQCSERGRRADEAER
EVDERYRAAWMEKHVGGQFDGVISGVTGFGLFVELTQSKVNGLVHVTQLPQDYYQFDPIR
KTLSGERRGREFRLGDPVRVLVLKASMEERKIDFRLADENGAAPEAPLPPREKPTKRKKK
SY
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atgacaaagaaaaaaaccccagattccgatcggccgagtcgccgcaaatctaccggcgca
ggcgattccagcactgccgaacagcagaagttgccgggctggatgccagacttcctggtc
cgcgccgcagccggcgcatcgaccaagtccgccaacaagcgcgctgccgacaaagcatcc
aacccctccaaagcctcgtcacagccggcggccgcgccgcctgcgccgcgcgctccgcat
ccgcgcaagagtgggccgtctgcgccgccgccggaacgcttccagaccaccgcgcctgcg
actgccgaattcaaggatccgcatgccgagcgcgaggctcttcggtatgccgagccgatc
gccagccgcgaggccatcctgcaattgcttgaagcctgcgacggtccgcagaccgccgaa
gaaattgccgagcagctcaatctgagcgaccgcatcgatgcgctgggcaagcgcctggcc
gcaatggtgcgcgaagcgcaactggtgcagaaccgccgcggtggctacgcgccggtgcag
cagaccagcctgatcgccggcgtggtcatcgccaatccggagggcttcggtttcctcaag
cccgacgagggcggcgacgacctgttcctgccgccgttcgaaatgcgcaaggtcatgcat
ggcgaccgcgcgctcgccaatgtcaccggcatcgaccgtcgcggccgtcgcgaaggtgcc
attgcacgcgtgctcgagcgtggcatgtcgcgcatgctggggcgctttttctatgagcac
ggtgtggcttacgtcgaccccgacgacaagcgcatccagcgcaatgtgcagattgccccg
gacggtatcggcgaggcacgcgaaggccaattggtggtctgcgaactgatcgcgccgccg
gacgcgcgccgcccggcgatcggcaagatcatcgcggtactgggcgacaagctgacgccg
tcgctggtcgtcgaaatggccatccacggccatgaattgccgcacgaatttccgcaggaa
gtgctggacgaagcggcggccgtgccgttggtggtcgagccgcagatgatcggcgggcgc
gtggacctgcggcagatgccactggtcaccatcgatggggaagacgccaaggatttcgac
gacgcggtgtattgcgagcccaatgccgacggcttccgtctggtggtggcaatcgccgat
gtgtccaattacgtccgtcccgggacgccgctggacgacgaagcgcaaaagcgcgccacc
tcggtgtatttccccggcttcgtggtaccgatgctgccggaaacgctgtccaacggtatc
tgctcgctgatgcccaaggtcgaccgcatgtgcttcgtctgcgacatgcaggtgggacgc
gatggtgaagtgaccggctcgcgtttttacgaagcggtgatgaattcgcacgcacgcctg
acctataaccaggtctggaaggcggtgggcgaagacgatgcggacaccaaggccttcatc
ggcccgctgctgccgcaggtgcagcgcctgcatcagctgtatcacgtgctgtcgaaggca
cgcacgcagcgcggggcgatcgagttcgaaacctccgaagtgcgcttcgtgctcgacaac
accggcgaggtcacccaggccggcatgctggtgcgcaacgatgcccacaagctcatcgaa
gaatgcatgatcgccgccaacgtcgaggcggcgcgctacctgctgagcgtgcacgtgcct
gcgccttaccgtgtgcatgagcgcccgccggagagcaagtacgaagacctgctggagttc
ctcaaggagttccagctgagcttgccggcatggagcaaggtgcgccccggcgattacacc
aagttgctgaagaaagtgcgcgcgcgcccggatgcggcgttgctggaatcggtgttgctg
cgcagccagagcctggcggtgtattcgccggagaacaacggccatttcggtctggcgttg
gaggcatacgcgcatttcacctcgccgatccggcgttacccggatctgctggtacaccgc
gcaatcaagcatgcgttgaccggcgccagcccgcagacattcatctataccccgcgtcag
atggcggcgctggctttgcaatgctccgagcgcggacggcgtgccgatgaagccgagcgc
gaagtggacgagcgctaccgcgcggcgtggatggaaaagcacgtcggtggccagttcgac
ggcgtgatcagcggtgtgacgggatttggcctgttcgtggagttgacgcagtccaaggtc
aacggcctggtgcacgtcacgcagctgccgcaggactattaccagttcgatccgattcgc
aagacgctcagcggcgagcgccgtggccgcgagttccgcctcggcgacccggtgcgcgtg
ctggtgctcaaggccagcatggaagagcgcaagatcgacttccgcctggccgacgaaaat
ggtgcagcgcccgaagcgccgctgccgccacgcgagaagccgaccaagcgcaagaagaag
tcgtactga
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