Xanthomonas euvesicatoria pv. citrumelo F1: XACM_2212
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Entry
XACM_2212 CDS
T01616
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
xax
Xanthomonas euvesicatoria pv. citrumelo F1
Pathway
xax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XACM_2212 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xax03019
]
XACM_2212 (rne)
03009 Ribosome biogenesis [BR:
xax03009
]
XACM_2212 (rne)
Enzymes [BR:
xax01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
XACM_2212 (rne)
Messenger RNA biogenesis [BR:
xax03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
XACM_2212 (rne)
Ribosome biogenesis [BR:
xax03009
]
Prokaryotic type
rRNA processing factors
XACM_2212 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TFIIA
zf-C2H2_FBX41
Motif
Other DBs
NCBI-ProteinID:
AEO42475
LinkDB
All DBs
Position
complement(2522716..2526396)
Genome browser
AA seq
1226 aa
AA seq
DB search
MKRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDY
GAERHGFLPLKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGNKGAALTTFIS
LAGRYMVLMPNSPSAGGVSRRIEGEDRAALKEALDKLDIPDDMGVIIRTAGVGRDAEELQ
WDLDYLLQTWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADIGEILVDTPELYADAQ
EFMKQVMPQSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAV
DVNSSRATKGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASSKHQREVENR
LQNALKYDRARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLS
IIRVAEEHAMKENTGQVLVQAPVEIANYLLNEKRSALREIEQRHESPIIIVADEQLHTPH
YEVTRLRENELGEESGKPSYQRGTPRKLPVHALTKAQLNIPAAPAVTSIKPSQPAPVREE
APAPVAPVAAPAPVVTVPIPAPVTGVVGWLKRIFGGVEPVAPAPESTPRPRQNDAGRNNR
GERGERGGQRRDGRDARNGGNGGNQQRGNGGNGNGANKERRDERRQPASAQGAQNGAQAQ
QQVQAPKPPRNETQAPKQQQPQQQKSKPQNQSPRPPRAPAQQDGAPAERQPRPARQDEGT
AAAQTVTSTAATATTSSVVAAIADAAAPTNAQTNANEAAQAHPVDVMVSESTADRGADSN
ATAPAQDAAGDDAANGEGGSRRRRGRRGGRRRRRGAGANGEGGTSVDGLEGDDLDSDADN
DLDGDSEGDDAGAHAHVSGAPRAGQPEFDFDDEAPAPAVRAKPESAAQATAKPRPVPKER
AEPQGGSDTASTTAPVSNTVPASQPSAAPVAEAARERPAAPVAATDAPAKPGPAVTASTA
ASTEGVAAQAAEQRPAPVAQQASASPAPLATPAPVASTPAPAVAPAAGTAPTAAVAAAAA
SAPAIASPVTNDAATSSQHQPAPSAPASAAVPAADAEAAKADHQQRAVSADVAAPSVQAA
PVQPARATPADDLPAPAAATPASQAAVVTVTSPHAEQSASQAPSAEVAMTSTSTVVQASP
SADTAPARKPYAPVQTTMLDALSPNDAAPAASSASKPPADPAAAQELQAGKPKPTVVVSE
PVKPAAPSTDADQVQDDDSNKPRGDH
NT seq
3681 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgaatgctgatcaacgcaacgcaggccgaagagctgcgcgtggcgattgtggac
ggccagaccctgtacgacatcgacatcgaacagccgtccaaggaacaaaagaagtccaac
atctacaagggccgtatcacccggctagagccttccctggaagcggcgttcgtggactat
ggcgccgagcgtcatggcttcctgccgctgaaggaaatttcccgcgattatttccaggcc
ggcgtcgaccataacaagtcgaccattcgtgagctgctgcgcgaaggccaggaaatcgtc
gtgcaggtggacaaggaagagcgtggcaacaagggcgccgccctgaccacgttcatctcg
ctggccggccgctacatggtgctgatgcccaattcgccgagcgccggtggcgtttcgcgc
cgcatcgagggcgaagaccgtgccgcgttgaaggaagcgctggacaagctcgacattcct
gacgacatgggcgtgatcatccgcactgccggcgtgggccgcgatgccgaagaactgcag
tgggatctggactacctgctgcagacctggaaggcgattgccgaagctgcgctgagcaag
ccggccgcgttcctgatctaccaggaatcgcgcctgatcatccgcgccctgcgcgactac
ctgcgcgccgatatcggcgagatcctggtcgatacgccggagctctacgccgacgcccag
gaattcatgaagcaggtgatgccgcagagcctgcgcaagctcaagcactacaccgacgat
atcccgctgttcaatcgcttccagatcgaatcgcagatcgaaggcgcctatgagcgcaac
gtgcgcctgccctcgggtggctcgatcgtggtggaccagaccgaagcgctgaccgccgtc
gacgtgaactcctcgcgcgccaccaagggcagcgatatcgaagaaaccgcgttccagacc
aatttggaagcggccgaagaagtcgcacgccagctgcgcctgcgtgacctgggtggcctg
gtggtcatcgacttcatcgacatggcctcgtccaagcaccagcgcgaagtcgaaaacagg
ctgcagaacgcactcaagtacgaccgcgcacgcgtgcagctgggccgtatctcgcgtttc
ggcctgatggaaatgagccgtcaacggctgcgaccgagcctgggcgaatccagccagatc
gtctgtccgcgttgcgatggccatggccgcatgcgcagcgtcgagtcgctgtcgctgtcg
atcatccgcgtggcagaagagcacgccatgaaggaaaacaccgggcaggtgctggtccag
gcgccggtggaaatcgccaactacctgctcaacgaaaagcgcagcgcactgcgtgaaatc
gagcagcgccatgagtcgccgatcatcatcgtcgccgacgagcagctgcacaccccgcac
tacgaagtcacgcgcctgcgcgagaacgagctgggcgaagagagcggcaagccgagctac
cagcgcggcaccccgcgcaagctgccggtgcatgcactgaccaaggcgcagttgaatatt
cccgcagccccggcggtcacgtcgatcaagccgagccaaccggcaccggttcgcgaagaa
gcccctgccccggttgcgcccgtcgctgcgccagcgccagtggtgaccgtgcccattccg
gcaccggtcaccggtgttgtgggctggctgaagcggatcttcggcggcgtcgagcccgtc
gccccggccccggagtcgaccccgcgtccgcgccagaacgatgccggccgcaataaccgt
ggcgaacgcggcgagcgtggcggtcagcgccgcgatggtcgcgatgcccgtaatggcggc
aatggtggcaaccagcaacgtggcaatggcggcaatggcaacggcgccaataaggaacgc
cgtgacgagcgtcgccagcctgccagcgcccagggcgcgcagaatggcgcacaggcacag
cagcaggtgcaggcgcctaagccgccgcgcaatgaaacgcaggcgccaaagcagcagcaa
ccgcagcagcagaagtccaagccgcagaaccagagcccacgcccgccacgtgcgccggca
cagcaggacggcgcgccagccgagcggcagccgcgtccggcacgccaggatgagggtacg
gcagcggcgcagaccgtgacctccactgccgcaacggccaccacgtcgagcgtggtggcc
gccattgccgacgccgctgcacccaccaatgcgcagaccaacgccaatgaagcggcgcag
gcgcatcctgtcgatgtcatggtgagcgaatccaccgctgatcgtggcgccgactcaaat
gcaactgcaccggcccaggatgccgcaggcgacgatgcagccaatggcgaaggtggaagc
cgtcgccgccgcggccgtcgtggtggccgtcgtcgtcgtcgtggcgccggtgccaacgga
gaaggtggtaccagcgtcgatggcctggaaggcgacgatctggacagcgatgccgacaac
gatctcgatggcgacagcgaaggcgacgacgccggtgctcatgcgcatgtatcgggcgca
ccgcgcgccggccagccggagttcgatttcgacgatgaggcaccggcaccggcggtgcgc
gccaagccggaatccgctgcccaagcaaccgccaagccgcgtccggttcccaaggagcgc
gcagagccacagggcggcagtgacacagcttcgaccaccgcgccggtttccaataccgtg
ccggcatcgcagccttcggcagcacccgttgccgaagccgcccgcgagcgccctgctgcg
cccgtcgctgctaccgacgcaccagccaaacccgggccggctgtcacagcgtcgacggct
gccagcaccgagggtgttgcagcgcaggctgcagaacagcgccccgcgccggtcgcacag
caggcatccgctagcccggctccgcttgccacccctgcgccagtggcatccacgccggca
cctgcagtggctcccgctgccgggactgcaccgacggcagcggtggcggctgccgcggct
tcggcaccggctattgcatcgcctgtgaccaacgatgcggcgacaagcagccagcaccaa
cctgcgccctcggcgccggcaagtgcggctgtacctgccgccgacgccgaggccgcgaag
gccgaccaccagcagcgcgctgtgtcggcggacgtggcagcgccttcggtacaggcagcg
ccggtgcagccggcacgggcaacgcctgctgacgacctaccggcacctgcggcggctacg
ccggcatcgcaggccgcagtagtcacggtgacgtcgccgcacgccgagcagtctgcttcg
caggcgccatcggccgaggtggcaatgacctcgacctcgacggttgtgcaggcaagccca
agtgcggacaccgcgcccgcacgcaagccgtatgctccggtgcagaccaccatgctcgat
gcgctgagcccgaacgatgctgcgccagcagcctcctcggccagcaagcctccggcagac
cctgcagcagcgcaggagttgcaggcaggcaagcccaagccgacggtggtcgtgtccgaa
ccagtcaagccggctgctccatcgaccgacgccgaccaggtgcaggatgacgacagcaac
aagccgcgtggcgatcactga
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