Xanthomonas euvesicatoria pv. citrumelo F1: XACM_3042
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Entry
XACM_3042 CDS
T01616
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
xax
Xanthomonas euvesicatoria pv. citrumelo F1
Brite
KEGG Orthology (KO) [BR:
xax00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xax03019
]
XACM_3042 (hrpA)
Enzymes [BR:
xax01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
XACM_3042 (hrpA)
Messenger RNA biogenesis [BR:
xax03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
XACM_3042 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
AAA_30
nSTAND3
NACHT
ResIII
SRP54
Cas3-like_C_2
AAA_23
T2SSE
AAA_25
PhoH
TsaE
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
AEO43295
LinkDB
All DBs
Position
complement(3511841..3515962)
Genome browser
AA seq
1373 aa
AA seq
DB search
MSAIDSTLADTLRERRHAVDGAMSRDRGRLLGLWSRWQGKPGNPQVRDAFEQALAASQAQ
RQARAEQQPAITLDDQLPIAREAERIIALIRNHQVVVIAGETGSGKTTQLPKLCLAAGRG
AAGMIGCTQPRRIAARAVAARVADELKTPLGTTVGFQVRFTDRVSDQSRIKFMTDGILLA
EIASDRWLSSYDTIIVDEAHERSLNIDFLLGYLKQLLRKRSDLKLIVTSATIDTERFARH
FDDAPVISVEGRTFPVEVRYRPLEGDTGDSDDGEHGSGRDGERSVNDAIVAAIDEITRID
PRGDVLMFLPGEREIRDAHQSLERRKYRETEVVPLYARLSAADQDRVFNPGPRRRLVLAT
NVAETSLTVPRIRYVVDPGLARVKRYSPRQKLDRLHIEPISQASANQRMGRCGRIAEGIC
YRLYAEADFAARPAFTDPEIRRSSLSGVILRMLQLGLGRIEDFPFLEAPDERAVADGWQQ
LLELGAIDAQRRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMIIIAAFLGIQDPRER
PPEAREAADNAHALFADARSEFVGILRLWDAYRQVHEDLTQSKLRDWCNRHFLGFLRMRE
WRELHRQLRLLCEELGWSEEPANVMLAPLLAGASAPAREDGHNVNRPTRGQLHRAARLAR
EGKPDPNAAPAQPAPAATNKQAEAAEASARTTERERAAAYQALHRALLAGLPTQIGHRTE
KGDYLAARQRRFVPFPGSALARKPPPWILAATLLDTQKVWGMTNAAIEPDWAIAELPHLL
ARKHFDAHWSRAQGQVVASEQISLFGLVLAPKKPVHFGKIDPAAAHDLFVRQGLVTGEIN
TRAAFVADNLKVLEQAREEEAKLRRAGIVADEGWQARWYLDRIPAELHSASGLDAWWKSL
PPDKRRSLHWSLNDLLPGEGSEADRFPKYFPLGDARLPLHYRFEPGAIDDGVTLEVPLHL
LNALDPARLSWLAPGFVADKASALIRSLPKAQRRNYVPAPDFGRAFYEAFSIASADDIRG
ELARFLTKATGTQVTALDFDEQALDTHLLMNLRLRDDDGKVLAESRDLDGLRARFGERAG
QAFAARAGRALAAEGLRDFPSAPIPEQVAGEAGVPAYPALVDQGDNAALRIFADRNDAAR
AHPRGVRRLLEIALADKIKQVRKQLPVSPKTGLLYAAIESQERLRGDLVDAALNAVLADG
LGAIRDPGAFAQRRDDAGKRLFGEAMERLKLAESILGAVAELKPLLEAPLMGWARGNLDD
MEQQLRALVHAGFLRDTPADALANYPRYLRAMILRTERAKRDPARDQARMLELKPFVDAV
EAAAAHGLQDRQEWQALRWDLEELRVSVFAQELGAKSGVSAKKLSQRVAALRS
NT seq
4122 nt
NT seq
+upstream
nt +downstream
nt
atgagcgctatcgactccacccttgccgacaccttgcgtgagcgccgccatgccgtggat
ggtgcgatgagccgcgaccgtggccgcttgctgggcctatggtcgcgctggcagggcaag
ccgggcaacccgcaggtgcgcgatgcgttcgagcaggcgctggcggcatcgcaggcgcaa
cgccaggcgcgggccgagcagcagccggccatcacgctggacgaccagttgccgatcgcg
cgcgaggccgagcgcatcatcgcgctgatccggaaccatcaggtggtggtcatcgccggc
gaaacaggctcgggcaagaccacccagctgcccaagctttgcctggcggccggacgcgga
gccgccgggatgatcggctgcacccaaccacgccggatcgccgcgcgtgcagtggccgcg
cgcgtggccgacgagctgaagacgccattgggcacgacggtgggcttccaggtgcgcttc
accgatcgcgtcagcgatcagtcgcgcatcaagttcatgaccgacggcatcctgctggcg
gaaatcgccagcgaccgttggctgtcgtcctacgacaccatcatcgtggacgaggcgcac
gagcgcagcctcaacatcgatttcctgctcggctatctcaagcagttgctgcgcaagcgc
tccgacctcaagttgatcgtcacctcggccaccatcgataccgagcgctttgcacggcac
ttcgacgatgcgccggtgatcagcgtggaaggccgcacctttccggtcgaggtgcgttat
cgcccgctggaaggcgatacgggcgacagcgacgatggcgaacacggcagcggccgcgac
ggcgagcgcagtgtcaacgatgcgatcgtggcggccatcgacgaaattacccgcatcgac
ccgcgcggcgatgtgctgatgttcctgccgggcgagcgcgagattcgcgatgcgcaccag
tcgctggaacggcgcaaataccgcgaaaccgaagtggtgccgctgtacgcgcggctgtcg
gcggctgatcaggaccgtgtgttcaacccgggcccgcgccggcgcctggtactggccacc
aacgtggccgagacctcgctgacggtgccgcgcatccgctatgtggtggatccggggctt
gcccgcgtcaagcgctacagcccgcgccagaagctggaccggctgcatatcgagccgatc
tcgcaggccagcgccaaccagcgcatgggccgttgcgggcgcattgcagagggtatctgc
taccggctgtatgccgaagcggactttgccgcgcgtccggcgttcaccgatccggaaatc
cgacgttcctcgttgtccggggtgatcttgcgcatgctgcagttggggctgggcaggatc
gaagacttcccgttcctggaggcacccgacgaacgtgcggtggccgatggctggcaacag
ctgctggagctgggcgccatcgatgcgcagcggcgtctgaccgccaccgggcgccagatg
gcgcgcctgccagtggacgtcaagctggcgcgcatgctggtggccgcgcagcaacatggg
tgcctgcgcgagatgatcatcatcgccgcattcctgggcatccaggatccgcgcgagcgc
ccgccggaagcgcgcgaggccgccgataacgcgcatgcgctgtttgccgacgcgcgctct
gaattcgtcggcatcctgcgcttgtgggatgcgtatcggcaggtgcatgaagatctcacc
caatccaagctgcgcgactggtgcaaccggcatttcctcggtttcctgcgcatgcgcgag
tggcgcgagctgcaccggcagctgcggttgctgtgcgaagaactgggttggagcgaagag
ccggccaatgtgatgctggcgccgttgctggccggtgccagcgcgcccgcccgcgaggac
ggccacaacgtcaaccggcctacgcgtggccaactgcaccgtgctgcgcggctggcgcgc
gaaggcaagccggatccgaatgcagcacctgcgcaacctgcgcctgctgcgacgaacaag
caggccgaggctgccgaagcctcggcgcggaccaccgagcgcgagcgtgcggcggcgtat
caggcgctgcatcgcgcgctgctggcgggcctgccgacgcagatcggtcatcgcaccgaa
aaaggcgattatctggccgcgcggcaacgccgcttcgtgccgtttccgggttccgcattg
gcgcgcaaaccgccgccgtggattctggcggccacgctgctggacacgcagaaagtgtgg
ggcatgaccaatgccgcgatcgagccggattgggcgattgccgagctgccgcatctgctg
gcgcgcaagcatttcgatgcgcactggtcgcgtgcgcaggggcaggtggtcgcttcggaa
cagatcagcctgttcgggctggtgctggcgccgaaaaagcccgtgcatttcggcaagatc
gatccggccgcagcgcatgacctgttcgtgcgccaaggcctggtgacgggcgaaatcaat
acgcgggccgcattcgtggccgacaatctcaaggtgctcgagcaggcgcgcgaagaagag
gccaagctgcgtcgtgccggtatcgttgccgacgaaggctggcaggcgcgctggtatctg
gatcgcattccggccgagctgcattcggccagcggtctggatgcgtggtggaagagcttg
ccgccggacaagcgccgcagcctgcattggtcgttgaacgatctgctgccgggcgaaggc
agcgaagccgatcgctttccgaaatatttcccactcggcgatgcgcgcctgccgttgcat
taccgcttcgagccgggggccatcgacgacggcgtgacgctggaggtgccgttgcacctg
ctcaatgcgctggatccggcgcgcctgtcgtggctggcgccgggcttcgtcgccgacaag
gcgtctgcgttgattcgtagcctgcccaaggcgcaacgccgcaactatgtgcctgcaccc
gatttcggacgtgcgttctacgaggcatttagcattgcctcggccgacgatatccgcggc
gaactggcgcgctttctgaccaaggccaccgggacgcaggtgacggcactggatttcgat
gagcaggcgctggacacgcatttgctgatgaacctgcgcctgcgcgacgacgacggcaag
gtgctggccgagtcgcgcgatctggacgggctgcgtgcgcgcttcggcgagcgcgcgggg
caggcattcgccgcacgggccgggcgcgcgctggccgccgagggcctgcgcgactttccg
agtgcgccgattcccgaacaggtggccggcgaggccggcgtgccggcatacccggcgctg
gtggatcagggcgacaatgcggcgctgcgtatctttgcagaccgcaacgacgctgcgcgg
gcgcatccgcgcggcgtgcggcgcttgctggaaatcgcattggccgacaagatcaagcag
gtgcgcaagcaactgccggtgtcgcccaagaccggtctgctgtatgcggcgatcgaatcg
caggaacgcctgcgtggcgatctggtcgatgcggcgctcaatgccgtgctggccgatggc
ctgggcgccattcgcgaccccggcgcgtttgcgcagcgccgcgacgatgcgggcaagcgg
ctgttcggcgaagcgatggagcgtttgaagttggccgaaagcatcctgggcgccgtggcc
gaactcaagccactgctggaggcgccgttgatgggctgggcacgcggcaacctggacgac
atggagcagcaactgcgcgcgctggtgcatgcaggcttcctgcgcgacacgccggccgat
gcattggccaattatccgcgctacctcagggcgatgatcctgcgtaccgagcgcgcaaag
cgcgatcctgcgcgcgaccaggcgcgcatgctcgagctcaaaccgttcgtggatgcagtg
gaagccgccgctgcgcacggtttgcaagaccgccaagagtggcaggcgctgcgttgggat
ctggaagaactgcgcgtgtcggtctttgcgcaggagctgggtgccaaatccggcgtttcg
gcgaagaaactgtcgcaacgggtcgctgcactgcgcagttga
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integrated database retrieval system
