Xanthomonas euvesicatoria pv. citrumelo F1: XACM_3688
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Entry
XACM_3688 CDS
T01616
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
xax
Xanthomonas euvesicatoria pv. citrumelo F1
Pathway
xax02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
xax00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
XACM_3688 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xax03021
]
XACM_3688 (rpoD)
Transcription machinery [BR:
xax03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
XACM_3688 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
AEO43932
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All DBs
Position
complement(4269891..4271768)
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AA seq
625 aa
AA seq
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MANERPAQQSDIKLLISKGLEQGYLTYAEVNDHLPDDLVDPEQIEDIISMINGMGIDVHE
VAPDAETLLLNDGNTGNREVDDTAAEEAAAALTALDTEGGRTTDPVRMYMREMGTVELLT
REGEIAIAKRIEEGLSQVQAALGVFPLSTEMLLADYEAHKEGKKRLAEIVVGFNDLIEEA
DAAAAALAAAGPVAVSDDEAVDEDDDEDGDDEAAEEEAGPTGPDPVEVATRMENLANEYA
KFKKAYAKNGAEHKLVVKAREDMAAIFTTLKLPLPLTDALVTQLRGVVNGIKDHERKVLH
LATTVARMPRKDFIRSWEGNQTNLEWVEDALKRKQKWSSALRDVKDQIISEQQGSIEMEK
ANYLTLGEIKEISRAMAYGEAKARKAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGN
IGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQ
MLQQFGREATPEELAKEMDMPEDKIRKVMKIAKEPISMETPIGDDEDSHLGDFIEDTNVE
SPIDNTTNINLSETVRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQ
IEAKALRKLRHPSRSEQLRSFLDID
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atggccaacgaacgtcctgcccagcaatccgacatcaagctactgatcagcaagggcctg
gaacagggctatctgacctacgccgaagtcaatgaccatctgcccgacgacctcgtcgac
ccggagcagatcgaagacatcatcagcatgatcaacggcatgggcatcgatgtccatgaa
gttgcacccgatgccgaaaccctgttactcaacgatggcaacaccggcaaccgcgaggtt
gacgacaccgccgccgaagaagctgctgccgcgctgaccgcgctcgacaccgaaggtggc
cgcaccaccgacccggtgcgcatgtacatgcgcgagatgggcacggtcgagctgctgacc
cgcgaaggcgaaatcgccatcgccaagcgcatcgaagaaggcctcagccaggtccaggcc
gcattgggcgtgttcccgctgtcgaccgaaatgctgctggccgattacgaagcgcacaag
gaaggcaagaagcgtctggccgagatcgtggttggcttcaacgacctgatcgaagaagcc
gatgcagccgctgctgcgctcgccgcggccggcccggtcgccgtgtccgacgatgaagcg
gtcgacgaagacgacgacgaagacggcgatgacgaggccgccgaagaagaggccggcccg
accggtccggatccggtggaagtggccacgcgcatggagaacctggccaacgaatacgcc
aagttcaagaaggcctatgccaagaacggcgccgagcacaagctggtggtcaaggcccgc
gaagacatggccgccatcttcaccacgctcaagctgccgctgccgctgaccgacgcgctg
gttacccagctgcgtggcgtggtcaatggcatcaaggatcacgagcgcaaggtgctgcac
ctggccaccacggtggcacgcatgccgcgcaaggacttcatccgctcctgggaaggcaat
cagaccaacctggaatgggtggaagacgcactcaagcgcaagcagaagtggtcgtcggcg
ctgcgcgacgtcaaggaccagatcatctccgagcagcagggctcgatcgagatggaaaag
gccaactacctgaccctgggcgagatcaaggaaatcagccgtgcgatggcctatggcgaa
gccaaggcgcgcaaggccaagaaggaaatggtcgaggccaacctgcgtctggtgatctcc
atcgccaagaagtacaccaaccgcggcctgcagttcctggacctgatccaggaaggcaac
atcggcctgatgaaggccgtggacaagttcgaataccgtcgcggttacaagttctcgacg
tatgccacgtggtggatccgtcaggccatcacccgttcgatcgccgatcaggcgcgcacc
atccgtattccggtgcacatgatcgaaacgatcaacaagttgaaccgcatttcccgtcag
atgctccagcagttcggccgcgaggccacgccggaggagctggccaaggaaatggacatg
cccgaggacaagatccgcaaggtgatgaaaatcgccaaggagccgatctcgatggaaacc
ccgatcggcgacgacgaggattcgcatctgggcgacttcatcgaggacaccaatgtggag
tccccgatcgacaacaccaccaacatcaatctctccgagacggtgcgtgacgtgttggcc
ggcctcaccccgcgcgaggcgaaggtgctgcgcatgcgcttcggtatcgacatgaacacc
gatcacacgctggaagaggtcggtaagcagttcgacgtcacccgtgagcggattcgtcag
atagaggccaaggcgttgcgcaagctgcgtcacccgagccgttcggaacagctgcgctcg
tttctggatatcgactga
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