Xanthomonas axonopodis pv. citrumelo F1: XACM_3730
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Entry
XACM_3730 CDS
T01616
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
xax
Xanthomonas axonopodis pv. citrumelo F1
Pathway
xax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XACM_3730 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xax03019
]
XACM_3730 (rhlB)
Enzymes [BR:
xax01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
XACM_3730 (rhlB)
Messenger RNA biogenesis [BR:
xax03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XACM_3730 (rhlB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RhlB
DEAD
Helicase_C
ResIII
Helicase_C_2
Motif
Other DBs
NCBI-ProteinID:
AEO43974
LinkDB
All DBs
Position
complement(4315742..4317457)
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AA seq
571 aa
AA seq
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MSDKPLTDVTFSSFDLHPALIAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKT
LAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYG
GVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDI
RFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETESITAARVRQRIYFPS
DEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLL
NRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISF
ACERYAMSLPDIEAYIEQKIPVEPVTSELLTPLPRAPRVPVEGEEADDDAGDSVGTIFRE
AREQRAAEEQRRGGGRSGSGGSRSGSGGGRREGAGADGKPRPRRKPRVEGQAPATAASTE
HPVVAAAAGQAPSAGVADAERAPRKRRRRRNGRPVEGAEPAVASTPVPAPAAPRKPTQVV
AKPVRAAAKPSGSPSLLSRIGRRLRSLVSGN
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacaaaccgctgaccgatgtgaccttttcctcgttcgatctgcatccggccttg
atcgccgggctggagagcgccgggtttacccgctgtaccccgatccaggcgctgaccttg
ccggtcgcgctgccgggcggcgatgtcgccggccaggcccagaccggtaccggcaagacc
ttggcgttcctggtcgcggtgatgaatcggctgctgatccgcccggccctggccgaccgc
aagccggaagacccgcgcgcgctgatcctggcgccgacccgcgagctggcgatccagatc
cacaaggacgcagtgaagttcggcgccgaccttggcctgcgctttgcgctggtctatggc
ggggtggattacgacaaacagcgcgaactgttgcagcagggcgtggacgtgatcatcgcc
accccgggccgcctgatcgactacgtcaagcagcacaaggtggtctcgctgcacgcctgc
gagatctgcgtgctggacgaggccgaccgcatgttcgacctgggcttcatcaaggacatc
cgcttcctgctgcggcgcatgcccgagcgcggcacccggcagacgttgttgttctcggcc
acgctcagccaccgcgtgctggagctggcctacgagcacatgaacgagccggaaaagctg
gtcgtcgaaaccgaaagcatcaccgctgcgcgggtgcgccagcgcatctatttcccctcc
gacgaagagaagcagacgctgctgttgggcttgctgtcgcgcagcgaaggcgcgcgcacc
atggtgttcgtcaataccaaggcgttcgtggagcgcgtggcgcgcaccctggagcggcac
ggctaccgggtcggcgtgctgtcgggcgatgtgccgcagaagaagcgcgagtcgctgctc
aaccgcttccagaaaggccagctcgaaatcctggtcgccaccgacgtggctgcgcgcggt
ctgcatatcgatggcgtcaagtacgtctacaactacgacctgccgttcgacgccgaagac
tacgtccatcgcatcggccgcaccgcgcgcctgggcgaggaaggcgatgcgatcagcttc
gcctgcgaacgctatgcgatgagcctgccggacatcgaggcctatatcgagcagaagatc
ccggtcgagccggtgacgtccgaactgctgacgccgctgccgcgtgcgccacgcgtgccg
gtggaaggcgaagaggccgacgacgacgctggcgacagcgtgggcacgatcttccgcgaa
gcgcgcgagcagcgcgccgccgaagaacagcgtcgcggtggcgggcgcagtggctcgggc
gggtcgcgcagcggcagtggcggtggtcgccgcgaaggcgccggtgccgatggcaagccg
cgtccgcgtcgcaagccacgggtggaaggtcaggcgcctgcaactgcggcgtcgaccgaa
catccggtcgttgccgcagcggcgggacaggcaccttccgcgggcgtggccgatgccgag
cgcgcgccacgcaagcgtcggcgtcgtcgtaacggtcgtccggtcgagggtgccgagccg
gcagtggcatccacgccggttcccgcacctgccgcaccgcgcaagcccacccaggtggtt
gccaagccggtgcgtgccgccgccaagccgtcgggcagcccctcgctgctcagccggatc
ggccgccgactgcgttcgctggtctcaggcaactga
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