Xanthomonas axonopodis pv. citrumelo F1: XACM_3977
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Entry
XACM_3977 CDS
T01616
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
xax
Xanthomonas axonopodis pv. citrumelo F1
Pathway
xax03030
DNA replication
xax03410
Base excision repair
xax03420
Nucleotide excision repair
xax03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xax00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
XACM_3977 (polA)
03410 Base excision repair
XACM_3977 (polA)
03420 Nucleotide excision repair
XACM_3977 (polA)
03440 Homologous recombination
XACM_3977 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xax03032
]
XACM_3977 (polA)
03400 DNA repair and recombination proteins [BR:
xax03400
]
XACM_3977 (polA)
Enzymes [BR:
xax01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
XACM_3977 (polA)
DNA replication proteins [BR:
xax03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
XACM_3977 (polA)
DNA repair and recombination proteins [BR:
xax03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
XACM_3977 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XACM_3977 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
AEO44214
LinkDB
All DBs
Position
complement(4588972..4591773)
Genome browser
AA seq
933 aa
AA seq
DB search
MSRLVLIDGSSYLYRAFHALPPLTNAQGEPTGALFGVVNMLRATLKERPAYIAFVVDAPG
KTFRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLALQGA
ADGLSVTISTGDKDFAQLVRPGIELVNTMSGSRMDSDAAVIAKFGVRPDQIVDLLALMGD
TVDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKGKIGDNLRAALPRLPLNRELVTI
KTDVTLASGPRALDLREPNAEALAVLYARYGFTQALRELGGAAAQAGLLAEPVALGAAAA
TARTEPGRARGTGFVSGPVHAAVDLDPSLSAPGQYETILTQEQLDSWIARLRAAGQFAFD
TETDSLDPLQADLIGLSVAAEPGQAAYLPFGHHFPGAPAQLDRTQALAQLAPLLTDPAVR
KLGQHGKYDLHVMRRHGVALAGYADDTLLESFVLNSGSARHDMDSLAKRYLGYDTVKYED
VCGKGAKQIPFAQISLEDATRYAAEDADITLRLHRVLGPRLASEPGLERVYRDIEMPLVD
VLARIEANGVCVDAAELRRQSADLSKRMLAAQQKATELAGRSFNLDSPKQLQALLFDELK
LPAVVKTPKGQPSTNEEALEAIADQHELPGVILEYRGLAKLRSTYTDKLPEMIHPQSGRV
HTSYHQAGAATGRLSSSDPNLQNIPIRTEDGRRIRRAFVAPAGRKLIACDYSQIELRIMA
HLSGDPGLVGAFESGADVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLAR
QLGIGRGEAQDYIALYFSRYPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQ
RAGAERAAINAPMQGTAADIIKRAMVNVDGWIADHAQRAKMILQVHDELVFEADINFVDT
LLSEVTTRMAGAAELRVPLVVDSGVGDNWDQAH
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atgagcagattagtcctgatcgacgggtccagttacctgtatcgcgcgttccacgcgctt
ccgccgctgaccaatgcccagggcgagcccaccggcgccttgttcggcgtggtcaacatg
ttgcgcgccaccttgaaggagcgcccggcctacatcgccttcgtggtggatgcgcccggt
aaaacgttccgtgatgacttgtatgccgactacaaggccaaccgaccgtcgatgcccgac
gacctgcgcgcgcaggtgcagccgatgtgcgacatcgtgcatgcgctgggcatcgacatc
ctgcgcatcgacggcgtggaagcggacgatgtgatcggtacgctggcgctgcagggcgct
gccgatgggttgagcgttaccatctccaccggcgacaaggacttcgcccagctggtgcgt
ccgggcatcgaactggtcaacaccatgagcggcagccgcatggattcggacgcggcggtg
atcgccaagttcggcgtgcggcccgatcagatcgtcgacctgctggcgttgatgggcgac
accgtcgacaacgtgcccggcgtggaaaagtgcggccccaagaccgccgccaaatggctg
gccgaatacgactcgctcgatggcgtcatcgccaacgccgacaagatcaagggcaagatc
ggcgacaacctgcgcgccgcattgccacgcctgccgctcaaccgtgagctggtgaccatc
aagaccgatgtcaccctagccagcggcccgcgcgcgctggacctgcgcgagcccaacgcc
gaggcgctggcggtgctgtacgcccgctacggcttcacccaggcgctgcgcgaactcggt
ggtgcggccgcccaggcggggctgctggccgagccggtggcgctgggcgctgctgctgcc
actgcgcgtaccgagccgggccgcgcgcgcggcaccggcttcgtctccggccccgtccac
gccgcggtagatctcgatccgtcgctgtcggcgcccggccagtacgagaccatcctgacc
caggagcagctcgacagctggatcgcgcggctgcgtgccgccgggcagttcgccttcgat
accgaaaccgacagcctggacccgctgcaagccgatttgatcggcctgagcgtggcggcc
gagcccggccaggcggcgtacctgccgttcggccatcacttccccggtgcgccggcccaa
ctcgaccgcacccaggcattggcgcaactggcgccactgctcaccgacccggccgtgcgc
aagctcggccagcacggcaagtacgacctgcacgtgatgcgccggcatggcgtggcgctg
gccggctatgccgacgacaccctgctggagagcttcgtgctcaattccggcagtgcccgc
cacgacatggacagcctggccaagcgctatctcggctacgacaccgtcaagtacgaagac
gtctgcggcaagggcgccaagcagatcccgttcgcccagatcagcctggaagacgccacc
cgctacgccgccgaggacgccgacatcaccttgcgcctgcatcgcgtgctcggcccccgg
ctggccagcgaaccgggcctggagcgcgtctaccgcgacatcgaaatgccgctggtggac
gtgctggcccgcatcgaagccaacggtgtgtgcgtggatgcggccgaactgcgccgccag
agtgcggacctgtccaagcgcatgctcgctgcccagcagaaagccaccgagctggccggg
cgcagcttcaacctggattcgcccaagcagctgcaggccttgctgttcgacgaactcaag
ctccccgccgtggtcaagacgcccaagggccagccctcgaccaacgaagaagcactggaa
gccatcgccgaccagcacgagctgccgggggtcatcctggaataccgtggcctggccaag
ctgcgcagcacctacaccgacaagctgccggagatgatccacccgcagtccgggcgcgtg
cacaccagctaccaccaggccggcgccgccaccgggcggctgtcctcgtccgatccgaac
ctgcagaacatcccgatccgcaccgaagacggtcgtcgcatccgccgcgccttcgtcgcc
ccggccggacgcaagctgatcgcctgcgactattcgcagatcgagctgcgcatcatggcg
cacctgtccggcgaccccggactggtgggcgcgttcgaatccggcgccgacgtccaccgc
gccaccgccgccgaagtgttcggccgcaccatcgacaccgtcagcggcgatgagcgccgc
gccgccaaggccatcaacttcggcctgatgtacggcatgagcgccttcggcctggcccgt
cagctcggtatcggccgcggcgaggcgcaggactacatcgcgctgtacttcagccgttac
ccgggcgtgcgcgacttcatggaaaccacccgccagcaggcgcgcgacaagggctacgtg
gaaacggtgttcgggcgccggctgtatctggacttcatcaatgccggcagccagggccag
cgtgccggtgccgagcgcgccgccatcaacgcgccgatgcagggcaccgccgcagatatc
atcaagcgcgccatggtcaacgtggacggctggatcgccgaccacgcgcaacgcgcgaag
atgatcttgcaggtgcacgacgaactggtgttcgaagccgatattaatttcgtcgatacg
ctactgagcgaggtcaccacgcgcatggcgggcgcagctgaattacgcgtgccgttggtg
gtggattcgggcgttggcgataattgggaccaagcgcattga
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