Xanthomonas euvesicatoria pv. citrumelo F1: XACM_4218
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Entry
XACM_4218 CDS
T01616
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V alpha chain
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
xax
Xanthomonas euvesicatoria pv. citrumelo F1
Pathway
xax03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xax00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
XACM_4218 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xax03400
]
XACM_4218 (recD)
Enzymes [BR:
xax01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
XACM_4218 (recD)
DNA repair and recombination proteins [BR:
xax03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
XACM_4218 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
RecD_N
Viral_helicase1
AAA_11
UvrD-helicase
SH3_13
AAA_22
NAT10_TcmA_helicase
DEAD
UvrD_C
T2SSE
AAA_16
nSTAND3
SLFN-g3_helicase
Phageshock_PspD
AAA_28
Rad17
Motif
Other DBs
NCBI-ProteinID:
AEO44449
LinkDB
All DBs
Position
complement(4904785..4907160)
Genome browser
AA seq
791 aa
AA seq
DB search
MTHPNLLAALNQSGALRTLDLAFAQSLQRLEPDTDPRVLAGAALASLAVTSGHAGLDPAR
AAMLLDARDGPAPTFPDPADWQRSLAASRWVDQPQPDAPAAADCPLVLERGLLYLRRYRE
YERRLALGLQRIAAQPLPPVDAATLAPLFAQLFPNAIPTPRTAEPTPLPPGEGARRAGEG
TGLPAPIHYQEGTNPPTPSHPPDRQAQAAALALRRALLLVTGGPGTGKTTTIARLLLLRI
AQARASSTPAPRIALAAPTGRAAERMAESLRAAIARAIADGIQLPAAGSLPAPSASAGLI
TSTHPTNAAAPASTGAGLELQTHAASERGGPPSWEALLPSGASTLHRLLGVIPDSPHFHH
NADNPLPFDLIVVDEASMVDLPLMCKLVDAVADGTQLILLGDADQLPSVEAGDVLAAILQ
AAGPGDALQPEDAQALQSLLGSAAVERLPAVTSATRSGGLDGHRVHLLRGYRQAQDFALA
PLADAIRAGDADTALALLRSGELPGVHFHEDGEDPLVLGRDALLAHWRALANAQDPAAAL
RDAGRLRLLTAVRAGPQGVRGLNARIEQLLADTGSGARRLGGASPWFQGRLLLITENSYR
HGLFNGDVGICLRSDAGPSPGQGDASAVTARGHAAPSSRPGHAGDSARHDAPATDRPAQG
PLVAWFEGDGDGQVRGFHPAALPAHESAFAMTVHKAQGSEFDEVWLQLPTRDARVLSREL
LYTGITRARRALHLAGSEAVMRAALARHAARISGLAWRLGAKDDKPPPVPAPTPASLPQP
PPSAPVQGALF
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atgacccatccaaacctgctcgccgccctcaaccagagcggcgccctgcgcaccctggat
ctggccttcgcgcaaagcctgcaacgcctggagcctgacaccgacccacgggtgctggcc
ggcgccgcgctcgcctcgctggcggtcaccagcggccacgccggcctggaccccgcccgc
gccgccatgttgctggacgcgcgcgacggcccggcgcccaccttcccggaccccgccgac
tggcaacgcagcctggccgcctcgcgctgggtcgaccaaccgcagcccgacgccccggcc
gccgccgattgcccgctcgtcctcgaacgcggcctgctctacctgcgccgctaccgcgag
tacgaacgccgcctggccttgggcctgcaacgcatcgccgcgcaaccgctgccgccggtc
gacgccgccacgctggcgccgctgttcgcgcagttgttcccgaacgcgatcccaacccct
cgcaccgcggagccaaccccgctccccccgggagagggtgcccgacgggcgggtgagggt
acgggcctgcccgcgccaatccactaccaagagggaacaaacccccccacgccatcccac
cccccggaccgccaggcccaggccgccgcactcgcgctacgccgcgcgttactgctggtc
accggcggcccgggcaccggcaagaccaccaccatcgcccgcctgctgttgctgcgcatc
gcccaggcacgggcatccagcacgccggccccacgcatcgccctggccgcgcccaccggc
cgcgccgccgagcgcatggccgaaagcctgcgcgccgccatcgcgcgtgccatcgccgac
ggcatccagctcccggccgccggctcgctccccgcaccatcggcaagcgccggcctcatc
acgtccacgcatccgaccaacgccgccgcgcccgcgtccaccggcgccggattggaactg
cagacgcatgccgcctcagagcggggcgggccgcccagctgggaagcgctgctgcccagc
ggtgccagcactctgcatcgtctgctcggcgtcatcccagattccccgcacttccaccac
aacgccgacaacccgctgccgttcgacctgatcgtcgtcgacgaagcctccatggtcgac
ctgccgctgatgtgcaaactggtcgacgccgtcgccgatggcacccagctgatcctgctt
ggcgatgccgaccagctgccttcggtggaagccggcgacgtgctggccgccatcctgcag
gccgccggcccgggcgatgccctgcagcccgaagacgcccaggcactgcaatcgctgctc
ggtagcgcggccgtcgagcgtctgcctgcggtcacctccgccacccgcagcggcggcctg
gacggccaccgcgtgcacctgctgcgcggctatcgccaggcgcaggatttcgcactggcg
ccactggccgacgccatccgcgccggcgatgccgacaccgccctggccctgctgcgcagc
ggcgaactgcccggcgtgcacttccacgaagacggcgaagatccgttggtactcggccgc
gacgcgctgctcgcgcactggcgcgcgctggccaacgcccaggaccccgccgccgccctg
cgcgatgccggccgtctgcgcctgctcaccgcggtgcgtgccggcccgcaaggcgtacgc
ggcctcaacgcccgcatcgaacaactgctcgccgacaccggctccggcgcccgccgtctg
ggcggcgcctcgccctggttccagggccgcctgctgctgatcaccgaaaacagctatcgc
cacggtctgttcaatggcgatgtcggtatctgcctgcgcagcgacgcgggcccttccccc
gggcagggcgacgcgagtgccgtgaccgcgcgcggccacgcggcaccgtcgtcaaggccg
ggccacgctggcgacagcgcacgccatgacgcccccgccaccgaccgccctgcccaaggc
cccttggtcgcctggttcgaaggcgacggcgacggccaggtgcgcggcttccatcccgcc
gcactgcccgcgcacgaaagcgccttcgctatgaccgtgcacaaggcccagggcagcgaa
ttcgacgaggtctggctgcaactgcctacccgcgacgcccgcgtactcagccgcgaactg
ctctacaccggcatcacccgcgcccgccgcgccctgcacctggccggcagcgaagcggtc
atgcgcgccgcactggcacgccacgccgcgcggatctcgggcttggcgtggcggttgggt
gcaaaagacgacaagccaccgccggttccagcacccacgccagcgtcgcttccacaaccg
ccgcctagtgcacctgtgcaaggtgcgctgttctga
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