Xanthomonas axonopodis pv. citrumelo F1: XACM_4219
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Entry
XACM_4219 CDS
T01616
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V beta chain
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
xax
Xanthomonas axonopodis pv. citrumelo F1
Pathway
xax03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xax00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
XACM_4219 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xax03400
]
XACM_4219 (recB)
Enzymes [BR:
xax01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
XACM_4219 (recB)
DNA repair and recombination proteins [BR:
xax03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
XACM_4219 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AEO44450
LinkDB
All DBs
Position
complement(4907357..4911409)
Genome browser
AA seq
1350 aa
AA seq
DB search
MSVSPVTDPYLQLPLHGVRLIEASAGTGKTFTLATLFTRLVVERGLRIGQILAVTFTEAA
TQELRRRIRERLVLAASLVPEAPSPLAGAVSAATESSAIQSPDAPSASAGADLGATDLAD
APSQPGPLLHEAPDVLLTRAILATHLGGGSETPVALRRRLQQAVEEIDLAAVFTIHGFCA
RVLREHALESGQAFAAPELLANDRQLLGEVAADLWRQRAADAVMAEDLIALWSGGPEALA
SDLRALVRHPTLLPAVATTTDDAPALLQAAHAAANALAAAFQTHGTAFFDAIMAAIEGGI
LSKVSYKPEWLASLWHWFETFAAAPALNTAPHAKLLKLTAAELAAGTNKKFVDRTPSSPM
SHQIDGYLTALARVEEWRSRRRIALLHALRDDAIARLALLKRQRRVQTYDDLVDGVAHAL
QGAQADALVKRLRTQYAIALVDEFQDTDDRQWSIFSNVFGEGPLARAAGLEPALFLIGDP
KQAIYGFRGGDVRTYLAAAVTAELAPPLSHNFRSRPGVLAAIDALYAQAGYADAFLTDGI
AFHPVRAGTKRVDEDLQRDGVTAPALTLWRAPEPPPPAKGKPKPWSAGRARELATAACVA
AIRGWLAGGRDGTATVCGRPVQAGDIAVLVRSHGEATRLQQALGAVGIPAVAAGKQSLFA
TEQALEVLALLQALLDPGDDSRLRAALATVLIGEDAIAIAALERDGERHRHWQQQALDWR
ERWQRGGPLALIGELGATHGQRLLALVDGERRLTNYLQLAELLQEADARALGPHGLVDWL
SRRIANADDNDEAQQLRLESDARRVQIVTLHKSKGLEYPLVFLPYIGIGRSDKGAGRHCV
VHAPDVGRQLHWKTERDDPSWSAAEAAWKQEQRAEDARLLYVGLTRAEHALWIASGPFHQ
HERTALSAMLRALDALQGAAGEGTVVVDTSTPPAHLPRLPAPIEAQVPPARSAQRHIAPE
WWVYSFTQLANADAGAATDPMASATVVGSGGSDEPSGSEAVAVAVASDAEPFDPRFAGNR
FGVVMHDVFERCDFAAWQAWRPSQPAPEGQAAPILQALQRGGYAQDDLDDGLRMLTALIG
HTLTVALPEGTRLADVPEPQRRNEMEFHFAMRPTRVDALLALLHRFGVVGDRQAFGARQR
LEGLMTGLIDLTYSVDGRWYVLDYKSNRLPSYDADALARAMAHSEYELQALIYTVALHRW
LRFRLGEAYDYARDFGGVRYLFCRGLDAGRPAEAAGSEAVAETPGHSIAGQRMSATARDS
TGDRPDSAPNAGATTTGDMRAPLGDPAPGIHAWRFEPALVLAVDALFAGKPADALSNDAP
AQGSRNGLEPLSPRERGWGEGTSAPGTPTP
NT seq
4053 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtcagccccgtcaccgacccgtacctgcagttgccgctgcacggcgtgcgcctg
atcgaggccagcgccggcaccggcaagacctttacgctggcaacgttgttcacccggctg
gtggtcgagcgcggcttgcgcatcggccagatccttgcggtgacctttaccgaagcggcc
acgcaggagctgcgccgccgcatccgcgaacgcctggtgctggccgcaagcctggttccc
gaggcgccatcgcctctcgcaggagcggtttcggccgcgaccgagtcgtccgcaatccag
tcgcccgacgccccatcggcttctgcaggagcagacctgggcgcgaccgacctcgccgat
gccccgtcgcagccagggccgctcctccatgaagcgcccgacgtgttactcacccgcgcc
atcctcgccacccatctgggcggcggcagcgaaacgcccgtcgccttgcgtcgccgcctg
cagcaggcggtggaagaaatcgatctggccgcggtgttcaccatccacggcttttgcgcg
cgcgtgctgcgcgaacacgcactggaaagcggccaggcgttcgccgcgccggaactgctc
gccaacgatcgccaattgcttggcgaagtggcggccgatctgtggcggcagcgcgccgcc
gatgcggtgatggccgaagatctcatcgccctgtggtcgggcggccccgaggccttggcc
agcgatctgcgcgcgctggtgcggcacccgacgctgttgccggcagtcgccacaaccacc
gacgatgcacctgccttgctgcaggccgcgcacgcggcagccaacgcactggccgccgca
ttccaaacgcacggcaccgcattcttcgacgccatcatggcggccatcgagggcggcatc
ctgagcaaggtcagctacaaacccgagtggctggcatcgctgtggcactggttcgaaacc
ttcgccgctgcgcctgcgctcaacaccgcgccgcatgccaagttgctcaagttgaccgcg
gcggaactggctgccggcaccaacaagaagttcgtcgatcgcacgccgtcttcgccgatg
agccatcagatcgatggctatctcactgcgctggcgcgcgtggaagaatggcgcagccgt
cgccgtatcgcattgctgcacgcgctgcgcgacgatgccatcgcacggctggcgctgctc
aagcggcaacgccgcgtgcagacctacgacgacctggtcgatggggtggcgcacgcattg
caaggcgcgcaggccgacgccttggtcaaacgcctgcgcacgcaatacgccatcgcgttg
gtggacgaattccaggacaccgacgaccgccagtggtcgatcttttccaacgtgttcggc
gaaggcccgctcgcacgagcagcagggctggaaccggcgctgtttctgatcggcgacccc
aagcaggccatctacggcttccgtggcggcgatgtgcgcacctatctggccgcggccgtc
accgccgaactggcgccgccgctgagccacaacttccgctcgcgccccggcgtgctggcg
gccatcgacgcgctgtacgcacaggccggctacgccgatgccttcctcaccgacggtatc
gccttccacccggtgcgggccgggaccaagcgcgtggatgaagacctgcaacgcgatggc
gtcactgcgccggcactgacgctgtggcgcgcgccggaaccgccgccgcctgcgaaaggt
aagcccaagccctggagcgccggccgcgcacgcgagctggccaccgccgcctgcgttgca
gcgatccgcggctggttggccggcggccgcgacggcacggccacggtgtgcggccggccg
gtgcaggccggcgatatcgccgtgctggtgcgcagccacggcgaggccacgcgtctccag
caggcgctcggcgcggtgggcattccggcggtggccgccggcaagcaaagtctgttcgcc
accgaacaggcgctggaagtgcttgccttgctgcaggccttgctcgatccgggcgacgac
agccgcctgcgcgccgccttggccacggtgttgatcggcgaagacgccatcgccatcgcc
gcacttgaacgcgacggcgagcgtcaccgccactggcagcaacaggcgctggactggcgc
gaacgctggcagcgcggcggcccgctcgccctgatcggcgaactcggcgccacccacggg
caacgcctgcttgccttggtcgatggcgaacgccgcctcaccaactatctgcaactggcc
gaactgctgcaggaagccgacgcgcgcgcactcggcccgcatggcctggtcgactggctg
tcgcggcgcatcgccaatgccgacgacaacgacgaagcccagcagttgcggctggaatcg
gacgcgcgccgcgtgcagatcgtcaccctgcacaagagcaagggcctggaatatccgctg
gtgttcctgccgtatatcggcatcggccgcagcgacaagggcgccggccgtcattgcgtg
gtgcatgcgccggacgtgggccgccagttgcactggaagacagagcgcgacgacccgagc
tggagcgccgccgaagccgcctggaaacaggaacaacgtgccgaagacgcgcgcctgctg
tatgtcggcctgacccgcgccgagcacgcgctgtggatcgccagcggcccgttccatcag
cacgaacgcactgcgttgtcggccatgctgcgtgcgctcgatgcgctgcagggcgcggca
ggcgagggcaccgtggtggtggacaccagcacgccgccggcccacttgccgcggctgccg
gccccgatcgaggcgcaggtgccgcccgcgcgcagcgcgcaacggcacatcgccccggaa
tggtgggtgtatagcttcacccaactggccaacgccgatgccggcgcggccaccgacccg
atggccagcgccaccgtcgtcggcagcggcggcagcgatgaaccgtccggcagcgaggcg
gttgccgtggccgttgccagcgacgccgaaccgttcgatccgcgctttgccggcaaccgc
ttcggcgtggtgatgcacgatgtgttcgaacgttgcgacttcgccgcctggcaggcctgg
cggcccagtcaacccgcgcccgagggccaggccgcacccatcctccaggccctgcaacgc
ggcggctacgcccaggacgacctcgacgacggcctgcgcatgctcaccgcgctgatcggc
cacacgctcaccgtggccttgcccgaaggcacccgcctggccgacgtgcccgaaccgcag
cgccgcaacgaaatggaattccatttcgccatgcggcccacccgcgtcgatgcgttgctg
gccctgctgcatcggttcggcgtggtcggcgaccgccaggccttcggcgcgcgccagcgc
ctggaaggcctgatgaccggcctgatcgacctcacctacagcgtggacgggcgctggtat
gtgctggactacaaatccaaccgcctgcccagctacgacgccgacgccctggcgcgggcc
atggcgcacagcgagtacgaactgcaggcgctgatctacaccgtagcgttgcaccgctgg
ctgcgcttccgtctgggcgaggcctacgactacgcccgcgacttcggcggcgtgcgctat
ctgttctgtcgcggcctggatgccgggcgccctgcggaggctgccgggtcggaagccgtt
gccgaaacccctggccattccatcgcgggccagcgcatgtccgcaaccgcgcgcgattcc
acgggcgacagacccgattccgctccgaacgccggcgccaccaccaccggcgatatgcgc
gcgccgcttggcgatccggcaccgggcatccacgcctggcgcttcgaaccggcgctggtg
ctggccgtggacgccttgttcgccggcaagcccgcagatgcgctgtccaatgacgcgcca
gcgcaagggtcccgcaacggcctcgagcccctctccccccgggagaggggttggggcgag
ggtacgtccgcaccagggacccccacaccatga
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