Xanthomonas sp. CPBF 426: XSP_000035
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Entry
XSP_000035 CDS
T10769
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
xaz Xanthomonas sp. CPBF 426
Brite
KEGG Orthology (KO) [BR:
xaz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xaz03032
]
XSP_000035
03400 DNA repair and recombination proteins [BR:
xaz03400
]
XSP_000035
Enzymes [BR:
xaz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
XSP_000035
DNA replication proteins [BR:
xaz03032
]
Prokaryotic type
DNA Topoisomerases
XSP_000035
DNA repair and recombination proteins [BR:
xaz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
XSP_000035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
DUF7508
Motif
Other DBs
NCBI-ProteinID:
CAD1785756
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All DBs
Position
1:43655..44866
Genome browser
AA seq
403 aa
AA seq
DB search
MKAKRVLRNAAATARAAGKLASVAAGAVAATAAVASVAAVAQAKATARAAGLTYVNDQQP
GISRRKAGKSFSYRSADGQRVADAETLQRIRALAIPPAYTEVWICAKPNGHLQATGRDAR
RRKQYRYHADWAQVRGEGKFERVIAFGQALPKLRRRLRRDLVLPGFPREKVLAIVVALLA
DTLVRVGNAEYARSNRSYGLTTLRNRHMEFLRGGRARLKFRGKSGQDHDIEVDDKQLVKL
IRECQQLPGQSLFQYRDDDGQLQPVDSGEVNDYLREAMGEDFTAKDFRTWGGTLAALQRL
ARLPLPERMSERALTQVQNDVIREVANALGNTPSVCRKAYIDPCVFEGWRAGHLQAMATG
VRGERQWEAATLRFLTDSRSKPGKTSSKPRKAAGAHPRRAASA
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atgaaagccaaacgtgttcttcgcaatgccgcagccaccgcgcgcgcggccggcaagctg
gcctccgttgccgccggcgcggtggccgccacggccgcggtggcgagcgtggccgcggtc
gcgcaggccaaggccaccgcgcgcgcggccgggctcacctacgtcaacgatcagcagccc
ggcatcagccgccgcaaggccggcaagagcttcagttaccgcagcgcagacgggcagcgc
gtggccgatgcggagaccttgcagcgcatccgcgccctggccattccgccggcgtatacc
gaggtgtggatctgcgccaagcccaacggccatctgcaggccaccgggcgcgatgcgcgc
cggcgcaagcagtaccgctaccacgccgattgggcgcaggtgcgtggcgaaggcaagttc
gaacgggtgatcgccttcggccaggcgttgcccaagctacgccgccggctgcgccgcgat
ctggtcctgccgggctttccgcgcgagaaggtgctggcgatcgtggtggcgttgctggcc
gacaccctggtgcgcgtgggcaacgccgaatatgcgcgcagcaatcgttcctacgggctg
accaccttgcgcaaccggcatatggaattcctgcgcggcggacgtgcgcggctgaagttc
cgcggcaagagcggccaggatcacgatatcgaggtggacgacaagcagctggtcaaactg
atccgcgaatgccagcaattgcccgggcaatcgctgttccagtaccgcgatgacgacggc
cagctgcagccggtggattcgggcgaggtcaacgactacctgcgcgaggcgatgggcgag
gatttcaccgccaaggatttccgcacctggggcggcacgctggccgcgctgcaacggctg
gcgcgcctgccgctgcccgagcgcatgagcgaacgcgcgctgacccaggtgcagaacgac
gtcatccgcgaagtggccaacgcgctgggcaacacgccctcggtatgccgcaaggcctac
atcgacccatgcgtgttcgaaggctggcgtgccggccacctgcaggccatggccaccggc
gtgcgcggcgagcgccagtgggaagcggccacgctgcgctttctgaccgactcgcgcagc
aagccaggcaaaaccagcagcaaaccgcgcaaggcggccggggcgcacccgcgccgtgca
gcatcggcctga
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