Xanthomonas sp. CPBF 426: XSP_000950
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Entry
XSP_000950 CDS
T10769
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
xaz Xanthomonas sp. CPBF 426
Pathway
xaz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xaz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
XSP_000950 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xaz03021
]
XSP_000950 (rpoC)
03400 DNA repair and recombination proteins [BR:
xaz03400
]
XSP_000950 (rpoC)
Enzymes [BR:
xaz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
XSP_000950 (rpoC)
Transcription machinery [BR:
xaz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
XSP_000950 (rpoC)
DNA repair and recombination proteins [BR:
xaz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
XSP_000950 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
CAD1788477
LinkDB
All DBs
Position
1:1122359..1126573
Genome browser
AA seq
1404 aa
AA seq
DB search
MKDLLNLFNQQRQTLDFDAIKIALASPDLIRSWSYGEVKKPETINYRTFKPERDGLFCAA
IFGPIKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFEAYVVTEPGLTPLERRQLLTEEQYLTARQEYNDDFDAAM
GAEAVYELLRTIDLQSEMTRLREEIASTGSETKLKRLTKRIKLIEAFLESGNRPEWMVMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLELNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LKLHQCGLPKKMALELFKPFVFAKLQRRGLATTIKAAKKLVEREEAEVWDILEEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMSRALENKKGEGMVFANTSEVKRAYDNR
VVELHAKVKVRITQVDVEADGKRSSGTSIVDTTVGRALLSEILPEGLPFQLANTEMTKKN
ISRLINSSYRLLGLKDTVVFADKLMYTGYAYATRAGVSIGIDDMLIPDEKKGILTEAEAE
VLEIQEQYQSGLVTAGERYNKVVDIWSRTSERIAKAMMDTIGTEKVENAKGETIDQKSMN
SLYIMADSGARGSQAQIRQLAGMRGLMARPDGSIIETPIKANFREGLNVQEYFNSTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVITEVDCGTTEGLIMTPIVEGGDVVEPLRERVL
GRVVAEDVYLPGNDEEPIVTRNTLLDEAWVAKLEDASVQSVKVRSTISCESSFGVCARCY
GRDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAVDNITVKTTGSVK
FNNLKSVAHASGALVAVSRSGELSVLDGHGRERERYKLPYGATITAKDGDAVKAGQGVAN
WDPHNHPIVSEVAGFIRFIDFVDGVTVIEKTDELTGLASREITDPKRRGAHAKELRPIVR
IVDGKGNDLTIPNTDLPAQYLLPPRSIVNLQDGAAVGVGDVVAKIPQEASKTRDITGGLP
RVADLFEARKPKDPAILAERSGIISFGKDTKGKQRLIIKDTDGSEHEELIPKYRQIIVFE
GEHVTKGETVVDGEPSPQDILRLLGVEPLAAYLVKEIQDVYRLQGVKINDKHIEVITRQM
LRKVEITDQGTSKFLNGEQVERQRVIEENARLVKRNELPAKYDPVLLGITKASLATESFI
SAASFQETTRVLTEAAVRGTRDNLRGLKENVIVGRLIPAGTGLAYHAGRRKSSGLTDSEM
ETLSGKPTVAEPVAAVADAGADEE
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacctgctcaacctcttcaatcaacagcgccagacgctggatttcgacgcgatc
aagatcgcgctggcgtcgccggacctgatccgttcgtggtcctacggcgaagtgaagaag
cccgaaaccatcaactaccggaccttcaagcccgagcgtgacggcctgttctgcgccgcc
atcttcggaccgatcaaggactatgagtgcctgtgcggcaagtacaagcgcatgaagcac
cgcggcgtggtctgcgaaaagtgcggcaccgaagtcaccctggccaaggtgcgtcgcgag
cgcatgggtcacatcgacctggcctcgccggtcgcgcacatctggttcctcaagtcgctg
ccctcgcgcatcggcctgatgctggacatgaccctgcgtgacatcgagcgcgtgctgtac
ttcgaagcctacgtggtcaccgagccgggcctgaccccgctcgagcgccgccagctgctg
accgaagagcagtacctgaccgcacgccaggagtacaacgacgacttcgacgccgccatg
ggcgccgaagcggtgtatgagctgctgcgcacgatcgacctgcagtcggaaatgacccgc
ctgcgcgaggaaatcgccagcaccggttcggaaaccaagctcaagcgcctcaccaagcgc
atcaagctgatcgaagccttcctggaatcgggcaaccgtccggagtggatggtcatgacc
gtgctgccggtgctgccgccggacctgcgcccgctggtgccgctggatggcggccgcttc
gcgacctcggatctgaacgatctgtaccgccgcgtgatcaaccgcaacaaccgtctgcgt
cgtctgctcgagctcaatgcgccggacatcatcgtgcgcaacgagaagcgcatgctgcag
gaatcggtcgatgcgctgctggacaacggccgtcgcggccgtgccatcaccggcaccaac
aagcgtccgctgaagtcgctggccgacatgatcaagggcaagcagggccggttccgtcag
aacctgctcggcaagcgcgtggactactccggtcgttcggtcatcaccgtcggtccgtac
ctcaagctgcaccagtgcggcctgccgaagaagatggcgctggagctgttcaagccgttc
gtgttcgccaagctgcagcgtcgcggcctggccaccaccatcaaggccgccaagaagctg
gtcgagcgcgaagaagccgaagtctgggacatcctggaagaagtgatccgcgagcatccg
gtgctgctgaaccgtgcgccgaccctgcaccgcctgggcatccaggcgttcgagccggtg
ttgatcgaaggcaaggccatccagctgcatccgctggtgtgtactgcgttcaacgccgac
ttcgacggtgaccagatggccgtccacgtgccgctctcgctggaagcccagctggaagcg
cgtgcgctgatgatgtccaccaacaacatcctgtcgccggccaacggcgagccgatcatc
gtgccgtcgcaggacgtggtgttgggcctgtactacatgagccgcgccctggagaacaag
aagggcgaaggcatggtgttcgccaacaccagcgaagtgaagcgcgcctacgacaaccgc
gtggtggaactgcacgccaaggtcaaggtccgcatcacccaggtggacgtggaagccgac
ggcaagcgcagcagcggcacctcgatcgtagacaccacggtcggtcgtgcgctgctgagc
gaaatcctgcccgaaggcctgccgttccagctggccaacaccgagatgaccaagaagaac
atctcgcgcctgatcaactccagctaccgtctgctgggcttgaaggacaccgtcgtgttc
gccgacaagctgatgtacaccggctatgcctacgcaacccgcgcaggcgtgtcgatcggc
atcgacgacatgctgatcccggacgagaagaagggcatcctcaccgaggccgaagccgaa
gtgctggagatccaggaacagtaccagtccggtctggtcaccgccggcgagcgctacaac
aaggtcgtggacatctggtcgcgcaccagcgagcgcatcgccaaggcgatgatggacacc
atcggtaccgagaaggtcgaaaatgccaagggcgaaaccatcgaccagaagtcgatgaac
tcgctgtacatcatggccgactccggtgcgcgtggtagccaggcgcagatccgtcagctg
gccggcatgcgcggcctgatggcgcgtccggatggctcgatcatcgagacgccgatcaag
gcgaacttccgcgaaggcctgaacgtgcaggagtacttcaactccacccacggtgcccgt
aagggtctggccgataccgcgctcaagaccgcgaactcggggtatctgacccgtcgtctg
gtcgacgtggcgcaggacgtggtgatcaccgaggtcgattgcggcaccaccgaagggttg
atcatgaccccgatcgtggaaggcggcgacgtggtggaaccgttgcgcgagcgcgtgctg
ggccgtgtggtggccgaggacgtgtacctgccgggcaacgacgaagagccgatcgtcacc
cgcaacacgctgctggacgaagcctgggttgccaagctggaagacgccagcgtgcagtcg
gtgaaggtgcgttcgaccatcagctgcgaatcctcgttcggcgtgtgcgcacgctgctac
ggtcgcgatctcgcccgcggtcaccaggtcaacatcggtgaggcggtcggcgtcattgcg
gcgcagtcgatcggtgagccgggtacccagctgaccatgcgtacgttccacatcggtggt
gcggcatcgcgtgcggcggcggtggacaacatcaccgtcaagaccaccggttcggtgaag
ttcaacaacctgaagtctgtggcgcacgccagcggcgcgctggtcgctgtctcgcgttcg
ggcgaactgtccgtactcgacggccatggccgcgagcgcgagcgttacaagctgccgtac
ggcgccaccatcaccgccaaggatggtgatgcggtcaaggccgggcagggcgtggcgaac
tgggatccgcataaccacccgatcgtgtcggaagtggccggtttcatccgcttcatcgac
ttcgtcgacggcgtcaccgtcatcgagaagaccgacgaactgaccggtctggcctcgcgc
gaaatcaccgacccgaagcgtcgcggtgcacatgccaaggagctgcgcccgatcgtgcgc
atcgtcgacggcaagggcaacgacctgacgatcccgaatacggatctgccggcgcagtac
ctgttgccgccgcgctccatcgtcaacctgcaggacggcgccgccgtcggcgtgggcgac
gtggtcgccaagatcccgcaggaagcgtccaagacccgcgacatcaccggtggtctgccg
cgcgttgccgacctgttcgaagcgcgcaagccgaaggatccggcgatcctggccgagcgc
tcgggcatcatcagcttcggtaaggacaccaagggcaagcagcgcctgatcatcaaggac
accgatggatcggaacacgaagagctgatccccaagtaccgccagatcatcgtgttcgaa
ggcgagcatgtgaccaagggcgagaccgtggtggacggcgagccgagcccgcaggacatc
ctgcgtctgctgggtgtcgagccgctggccgcgtatctggtcaaggaaatccaggacgtg
tatcgcctgcagggcgtgaagatcaacgacaagcacatcgaggtgatcacccgccagatg
ctgcgcaaggtcgagatcaccgaccagggcaccagcaagttcctcaacggcgagcaggtc
gagcgccagcgcgtcatcgaggaaaatgcccgcctggtcaagcgcaacgagctgccggcc
aagtacgatccggtgctgctgggtatcaccaaggcctcgttggccaccgagtcgttcatc
tcggcggcttcgttccaggagaccacccgcgtgttgaccgaggctgccgtgcgcggcacc
cgcgacaacctgcgcggtctgaaggaaaacgtgatcgtgggtcgtctgatcccggccggt
accggcctggcgtatcacgccggacgtcgcaagtcgtcgggtctgaccgactcggaaatg
gaaacgctgtcgggcaagccgacggttgccgaaccggtcgcagccgtggccgacgctggc
gcggacgaggagtaa
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integrated database retrieval system
