Xanthomonas sp. CPBF 426: XSP_001640
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Entry
XSP_001640 CDS
T10769
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
xaz Xanthomonas sp. CPBF 426
Pathway
xaz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xaz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
XSP_001640 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xaz03400
]
XSP_001640 (sbcB)
Enzymes [BR:
xaz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
XSP_001640 (sbcB)
DNA repair and recombination proteins [BR:
xaz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
XSP_001640 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
XSP_001640 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
XSP_001640 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Herpes_ICP4_N
Motif
Other DBs
NCBI-ProteinID:
CAD1790484
LinkDB
All DBs
Position
1:complement(1898704..1900149)
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AA seq
481 aa
AA seq
DB search
MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFYVQPADDLLPSPYATMV
TGITPQHALREGVSEAEAFARISEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYER
EWRGGNSRWDLLDVLRLVHALRPDGIVWPQREDGATSFKLEHLADANAVREGDAHEALSD
VYATIGMARRFQQHQPKLWDYALRLRDKRFAATLLDVIGMQPVLHVSQRYPASRMCAAAV
LPLTRHPRIDSRVIVFDLEGDPEVLLRLSPDEIADRLYIRAADLPEGEQRIALKEVHVNK
SPALVAWQHLRAADFQRLGIDPDAVLAKAARLRALGPELAEKVRQVYGNERAAAPAVNDA
DASLYDGFLAEGDKRLLAQVRASAPAELGALESRFRDPRLVELLFRYRARNWPQTLSFDE
QERWNVYRRQRLLEDRGLGEVTLDQFHAQIADLRLAHPDDATKQSLLDQLAAWGLDLQRT
L
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgcctgacagctttctcttctacgacctggaaaccttcggccaggatccgcgccgcacg
cgcatcgcgcagttcgccgcggtgcgcaccgatgcgcagctgcgcgtgatcgaggaaccg
atcagtttctacgtgcagccggccgatgacctgctgccctccccgtacgcgaccatggtc
accggcatcaccccgcagcacgcactgcgcgaaggcgtgagcgaggccgaagcgttcgcg
cgcatctccgagcagatgagccggccgcagacctgcacactgggctacaactcgatccgc
ttcgacgacgaattcgtgcgctgcgggctgttccgcaatttctatgacccgtacgagcgc
gagtggcgcggcggcaattcgcgctgggatctgctggacgtgctgcggctggtgcatgcg
ctgcgcccggacggcatcgtctggccgcagcgcgaagacggcgccacctccttcaagctc
gaacacctggccgatgccaacgcggtgcgcgaaggcgacgcgcacgaggcgctgtcggac
gtgtacgccaccatcggcatggcgcgcaggttccagcagcatcagcccaagttgtgggac
tacgcgctgcgtctgcgcgacaagcgctttgcggcaacgctgctggacgtgatcggcatg
cagccggtgctgcatgtctcgcagcgctatcccgcctcgcgcatgtgcgctgccgcagtg
ctgccattgacgcgccatccacgcatcgacagccgcgtgatcgtgttcgatctggaaggc
gaccctgaagtgctgttgcgcctgagcccggacgagatcgccgaccggctgtatatccgc
gccgccgacctgcccgaaggcgagcagcgcattgcgctcaaggaagtgcacgtgaacaag
tcgccggcgctggtggcctggcagcatctgcgcgcggcggatttccagcgcctgggcatc
gacccggacgcggtgctggccaaggctgcacgcctgcgcgcgctcggccccgaactggcc
gaaaaggtgcgccaggtgtacggcaacgagcgcgctgcggcgccggcggtcaacgatgcc
gatgcctcgctgtatgacggcttcctggccgaaggcgacaagcgcctgctggcgcaggtg
cgcgccagtgcaccggccgagctgggcgcgctggaatcgcgctttcgcgatccgcgcctg
gtcgagttgctgtttcgctaccgcgcgcgcaactggccgcagaccttgtcgttcgacgag
caggaacgctggaacgtctaccgccgccaacgcctgctcgaggaccgtggcctgggcgag
gtcacgctcgaccagttccatgcgcagatcgcggatttacggcttgctcacccggacgat
gctaccaagcagtccctgctcgaccagctcgccgcctggggtttggacctccaacgcacg
ctatga
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