Xanthomonas sp. CPBF 426: XSP_002642
Help
Entry
XSP_002642 CDS
T10769
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
xaz Xanthomonas sp. CPBF 426
Pathway
xaz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xaz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XSP_002642
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xaz03019
]
XSP_002642
03009 Ribosome biogenesis [BR:
xaz03009
]
XSP_002642
Enzymes [BR:
xaz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
XSP_002642
Messenger RNA biogenesis [BR:
xaz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XSP_002642
Ribosome biogenesis [BR:
xaz03009
]
Prokaryotic type
rRNA helicases
XSP_002642
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
CMS1
AAA_19
adh_short
P-loop_SecA
Cas3-like_C_2
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
CAD1793459
LinkDB
All DBs
Position
1:complement(3081414..3083348)
Genome browser
AA seq
644 aa
AA seq
DB search
MTQESPAPLLFADLGLSDAVMKAVAAVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKT
AAFALPVLSNADLNQLKPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQ
QLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKL
PEKRQVALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALT
RILEVEPFDGMIIFARTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKLD
ILVATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGML
RSIERATRQPIEEMQLPSVDAVNDTRVARFMTRITETLAGGQIEMYRDLLQRYESENNVP
AIDIAAAMAKLLQGDAPFLLTPPVRGAREEFAPRERNDRGDRGDRGERPRFEPKFERGPR
ADGERAARPPRAERPAFADDGAGAERPRRDPVAPRGEPEFGMESYRIEVGHTHGVKPANI
VGAIANEAGLESRYIGRIDIQDDYSILDLPADMPRELLTHLKKVWVSGQQLNMRKLEDGE
AAAAPSRPRFPRGGKPSGRPNGPNRPMDRAGAPHRKGPPKPRGE
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgacccaagaatctcccgcgccgctgctgtttgcagacctcggcctctcagacgctgtg
atgaaggcggttgccgccgtcggctacgagtcgccgtcgccgatccaggccgccaccatt
cccgcgctgctggccggccgcgacgtgctcggccaggcgcagaccggcaccggcaagacc
gccgcgttcgcgctgccggtgctgtccaacgccgacctcaaccaactcaagccgcaggcg
ctggtgctggccccgacccgcgagctggccatccaggtcgccgaggcgttccagaaatat
gccgaagccattcccggcttccgcgtgctgccggtctacggcggccagccctacgcgcag
cagctgagcgcgctcaagcgcggcgtgcatgtggtggtcggcactcccggccgggtgatc
gatcacctggatcgcggcacgctggacctgtcccagctcaagacgctggtgctggacgaa
gccgacgaaatgctgcgcatgggcttcatcgacgacgtcgaagcggtgctgaagaagttg
ccggagaaacgccaggtggcgctgttctcggcaaccatgccgccggcgatccgccgcatc
gcgcagacctatctgaaagacccggccgaagtcaccatcgcggccaagaccaccacctcg
gccaatatccgccagcgctactggtgggtgagcggcctgcacaagctggacgcgctgacc
cgcatcctggaagtcgagccgttcgacggcatgatcatcttcgcccgcaccaaggccgcc
accgaagagctggcgcagaagctgcaggcacgcggcatggccgcggcggccatcaacggc
gacatgcagcaggccgcccgcgagaagaccattgcccagctcaaggacggcaagctcgac
atcctggtcgccaccgacgtggccgcgcgcggcctggacgtggagcgcgtcagccatgtg
ctgaactacgacatcccgtacgacaccgaaagctacgtgcaccgcatcggccgtaccggc
cgtgccggccgcaatggcgacgcgatcctgttcgtcaccccgcgcgagaagggcatgctg
cgttcgatcgagcgcgccacccgccagccgatcgaagagatgcagctgccgagcgtggat
gcggtcaacgacacccgcgtggcacggttcatgacccgcatcaccgagaccctggccggc
ggccagatcgagatgtatcgcgatctgctgcagcgctacgagagcgagaacaacgtgccg
gcgatcgatatcgccgcggcgatggccaagctgctgcagggtgatgcgcccttcctgctg
accccgccggtgcgtggcgcacgcgaggagttcgccccgcgcgagcgcaatgatcgcggt
gatcgcggcgaccgtggcgagcgtccgcgcttcgagccgaagttcgagcgtggcccgcgt
gccgatggtgagcgcgcggcacgcccgccgcgtgcggaacgtccggccttcgccgatgat
ggcgccggtgccgagcgtccgcgccgcgacccggttgccccgcgtggcgagccggagttc
ggcatggagagctaccgcatcgaagtgggccacacccacggcgtgaagccggccaatatc
gtcggcgcgatcgccaacgaagccggcctggaaagccgctacatcggccgtatcgacatc
caggacgactattcgatcctggacctgccggccgacatgccgcgcgagctgctgacgcac
ctgaagaaggtgtgggtgtccggccagcagctcaacatgcgcaagctggaagacggcgag
gcggctgcagcgccgtccaggccgcgcttcccgcgcggcggcaagccgtccggccgcccg
aatggcccgaaccgtccgatggaccgtgccggcgcgccgcatcgcaagggcccgcccaag
ccccgcggcgagtaa
DBGET
integrated database retrieval system
