Xanthomonas sp. CPBF 426: XSP_002919
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Entry
XSP_002919 CDS
T10769
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
xaz Xanthomonas sp. CPBF 426
Pathway
xaz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xaz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XSP_002919 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xaz03019
]
XSP_002919 (recQ)
03400 DNA repair and recombination proteins [BR:
xaz03400
]
XSP_002919 (recQ)
Enzymes [BR:
xaz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
XSP_002919 (recQ)
Messenger RNA biogenesis [BR:
xaz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XSP_002919 (recQ)
DNA repair and recombination proteins [BR:
xaz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
XSP_002919 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
CAD1794282
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All DBs
Position
1:3408393..3410189
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AA seq
598 aa
AA seq
DB search
MSSPAHELLSRVFGYDDFRGPQQAIVEHVAAGNDALVLMPTGGGKSLCYQVPALLRDGIG
IVVSPLIALMQDQVEALRQLGVRAEFLNSTLDAENAQRVERALLSGDLDLLYVAPERLLT
QRFLSLLERSRIALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWPHIPRMALTATADPPT
QREIAERLDLVDARHFVSSFDRPNIRYTVVQKDNARKQLQEFLGRHRGSAGIVYAMSRRK
VEETAQYLCSQGFNALPYHAGLPAEVRAENQRRFLREDGIIMAATIAFGMGIDKPDVRFV
AHVDLPKSLEGYYQETGRAGRDGDPAEAWLCYGLGDVVLLKQMIEQGEAAEERKRLERAK
LDHLLGYCESMQCRRQVLLAGFGETYPKPCGNCDNCLTPAAAWDATVASQKALSCVYRSG
QRFGVGHLIDILRGSENERIKQLGHDQLSTYGIGRDLDERTWRGVFRQLVAASLLEVDSE
GHGGLRLTDASRQVLKGERQVMMRRENPAAGRERSAQRTGLPVQPQDLVLFNALRGLRAE
LAKEQNVPAFVIFHDSTLRNIAEQRPTSIDALSRVGGIGGGKLARYGAQLIEIVREQG
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcccccgcccacgaactgctcagccgcgtcttcggttacgacgacttccgcggc
ccacagcaagccattgtcgaacacgtcgcggcaggcaacgatgccctggtgctgatgccc
accggcggcggcaagtcgctgtgctaccaggtgccggcgctgctgcgcgacggtatcggc
attgtggtctcgccgctgatcgcactgatgcaggaccaggtcgaggccttgcgccagctc
ggcgtgcgcgccgaattcctcaattccacgctggacgcggaaaacgcccagcgggtcgaa
cgtgcgttgctgtccggcgaccttgacctgctctacgtcgcgccggagcgcctgctgacc
cagcgcttcctgtccctgctggaacgcagccgcatcgcgctgtttgccatcgacgaggcg
cattgcgtttcgcaatggggccacgacttccgccccgagtaccgccagctcaccgtcttg
cacgaacgctggccgcatatcccgcgcatggccttgaccgccaccgccgacccgccgacc
cagcgcgagatcgccgaacgcctggatctggtcgacgcgcgccacttcgtcagctccttc
gaccgccccaatatccgctacaccgtggtgcagaaggacaacgcgcgcaagcagctgcag
gagttcctgggccgtcaccgcggctcggccggcatcgtctatgcgatgtcgcggcgcaag
gtcgaagagaccgcgcagtatctgtgctcgcaaggcttcaacgccctgccctaccacgcc
ggcctgccggccgaggtgcgtgcggaaaaccagcgccgcttcctgcgcgaggacggcatc
atcatggccgccacgatcgccttcggcatgggcatcgacaagcccgacgtgcgcttcgtg
gcgcatgtggatctgcccaagtcgctggaaggctattaccaggaaaccggccgcgccggc
cgcgatggcgacccggccgaggcctggctctgctacggcctgggcgatgtggtgctgctc
aagcagatgatcgaacagggcgaagcagccgaggagcgcaagcggctggagcgcgccaag
ctcgatcacctgctcggctactgcgaatcgatgcaatgccgccgccaggtgttgctggcc
ggcttcggcgagacctatcccaagccctgtggcaactgcgacaactgcctgacgcccgcc
gccgcgtgggacgccacggtggcctcgcagaaggcgctcagctgcgtgtaccgcagcggg
caacgcttcggtgtcggccacctgatcgacatcctgcgcggcagcgagaacgagcgcatc
aagcagctcggccacgaccagctgagcacctacggcatcggccgcgacctggacgagcgc
acctggcgcggggtgttccgccagctggtggcggccagcctgctggaggtcgacagcgag
ggccatggtggcctgcgcctgaccgacgccagccgccaggtgctcaagggcgagcgccag
gtgatgatgcgccgcgagaacccggctgccgggcgcgagcgcagcgcgcaacgcaccggc
ctgccggtgcagccgcaggacctggtgctgttcaacgccctgcgcggcctgcgcgcggag
ctggccaaggagcagaacgtgccggccttcgtgatcttccacgacagcacgctgcgcaat
atcgccgaacagcggcccaccagcatcgacgcactctcgcgtgtcggcggtatcggcggc
ggcaaactcgcccgctatggggcgcagctgatcgagatcgtgcgcgagcagggctga
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