Xanthomonas sp. CPBF 426: XSP_003350
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Entry
XSP_003350 CDS
T10769
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
xaz Xanthomonas sp. CPBF 426
Pathway
xaz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xaz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XSP_003350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xaz03019
]
XSP_003350
Enzymes [BR:
xaz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
XSP_003350
Messenger RNA biogenesis [BR:
xaz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XSP_003350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25_NTPase-like
AAA_22
P-loop_SecA
HEM4
Motif
Other DBs
NCBI-ProteinID:
CAD1795559
LinkDB
All DBs
Position
1:3958681..3960069
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AA seq
462 aa
AA seq
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MSFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLL
QHLGTSPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD
TLRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQ
DRQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHL
LAQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVL
VATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQ
IVRMLGRDVEIRDVPGYEPQTPIRWGNSAPGRAEQPGGDRAPRKSHARRPHGDAPRQAHA
HAGPKKPGGQRSSGPRQAGVAAGAGAGRRDGGRGGQRPGGTR
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgaatccctgggcctggcgcccttcctgctgcgcgcgttggccgagcagggc
tacgaaacccccactgcgatccagcagcaggcgatcccgctggtgctggcaggccatgac
ctgctggccggcgcacagaccggtaccggcaagaccgccgcgttcggcctgccgttgctg
cagcacctgggcacctcgccacagccggtcaacggcccgcgcaagccgcgcgcgctgatc
ctgacccccacccgcgagctggccacccaggtgcacgacagcctgcgcggctacagcaag
tacctgcgcatcccgagcgcggtgatctacggcggcgtgggcatgggcaaccagctggac
acgctgcgtcgtggtgtggacctgctgatcgcctgcccgggccggctgatcgaccatatc
gagcggcgcagcgtggacctgtccggcatcgaagtgctgatcctggacgaagccgatcgc
atgctcgacatgggctttttgccctcgatcaagcgcatcctgaccaagctgccgcgccag
gaccgccagaccctgctgttctcggccaccttcgaagagaacatcaagcagctggcgctg
gagttcatgcgcaacccgatgcagatccaggtcaccccgagcaacaccgtggccgagagc
atcacccaccgcgtgcacccggtcgatggggcgcgcaagcgcgacctgctgctgcacctg
ctggcgcaggacagccgcgagcagaccctggtgttcgcccgcaccaagcatggcagcgac
aagctggcgctgttcctggagaagtccggcatcaagaccgcggcgatccacggcaacaag
agccagggccagcgcatgcgtgcgctgagcgacttcaaggccggccgcgtgaccgtgctg
gtggccaccgatatcgccgcgcgcggcatcgacatcgaccagctgcccaaggtcatcaac
tacgacctgccgatggtggccgaggattatgtgcaccgcatcggccgcaccggccgtaac
ggatccaccggcgaggcgatctcgctggtggcgcaggacgaagccaagctgctgcgccag
atcgtgcgcatgctgggccgcgatgtggaaatccgcgacgtgccgggctacgagccgcag
accccgatccgttggggcaatagcgcgccgggtcgtgccgagcagccgggtggcgatcgc
gcgccgcgcaagagccacgcgcgtcgtccgcatggcgatgcaccgcgtcaggcgcatgcg
catgccggcccgaagaagcccggtggccagcgcagcagcggcccgcgtcaggccggtgtt
gctgccggtgccggcgcaggccgtcgcgatggcggccgtggcggtcagcgtccgggcggc
acgcgctga
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