Xanthomonas sp. CPBF 426: XSP_003682
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Entry
XSP_003682 CDS
T10769
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
xaz Xanthomonas sp. CPBF 426
Pathway
xaz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xaz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XSP_003682 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xaz03021
]
XSP_003682 (rho)
03019 Messenger RNA biogenesis [BR:
xaz03019
]
XSP_003682 (rho)
Transcription machinery [BR:
xaz03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
XSP_003682 (rho)
Messenger RNA biogenesis [BR:
xaz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
XSP_003682 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA
OB_RNB
S1CSD-TOTE-2
Spore_III_AA
Fungal_virus_P2_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CAD1796538
LinkDB
All DBs
Position
1:4326256..4328160
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AA seq
634 aa
AA seq
DB search
MSDHPSSDTGSSVDAPVEKRVRKPRVSKTAAATDDGGAQQPNLPLPASPAPETPRAPQAP
SHAADPAPAQTSGDGASYAGNAPSASQGNQGNQGNQGNDNTHGDSREGGQTQQQRFNQAQ
QQQNQNQAQHRGQGQNQGQPQAQSQGQDQGQNGGQNPQGQGQNQQGNRRDRFRNRRDRGR
DRFGNEGGGGMPSSDGSNEPFVARPHPAVPEGFPVYSLSDLKRMPAQKLLDIADQLNIQE
GVARARKQDVIFALLKVLTRHGEGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPS
QIRRFNLRTGDHLSGRIRFPKDGERYFALSIVDTINGEPLEASKNKVLFENLTPLFPRRR
FRLERGDGSTEDITGRILDLMAPQGKGQRALIVSPPKAGKTMMMQQVATAITSNHPEVHM
IVLLIDERPEEVTEMQRTVRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILL
DSITRLARAYNNVVPSSGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETG
SKMDEVIYEEFKGTGNSEVHLNRRITEKRVYPAIDINRSGTRREDLLIEPELLQKIWILR
KLLHPMDEIAAMEFLLDKMKTTKSNDEFFSSMKR
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
ttgtccgatcatccttcctccgataccgggagcagcgtcgacgctcctgtcgagaagcgc
gtgcgcaagccgcgcgtgagcaagaccgccgctgccaccgacgatggtggcgcgcagcag
cccaacctgcccttgcccgccagccccgcacccgagaccccacgtgccccgcaggcaccg
tcgcacgctgccgacccggcaccggcgcagacgtccggcgatggcgcctcctacgccggt
aacgcccccagcgccagccagggcaaccagggcaaccagggcaaccagggcaacgacaac
acccatggcgactcccgcgagggtggccagacgcagcagcagcgcttcaatcaggcgcag
cagcagcagaaccagaatcaggcgcaacaccggggccagggccagaaccagggtcagccc
caggcgcaaagtcagggccaggaccagggtcagaatggcggccagaacccgcaaggccag
ggccagaaccagcagggcaaccgccgtgaccgcttccgcaaccgccgtgaccgtgggcgc
gaccgcttcggcaacgaaggtggcggcggcatgccctcgtcggatggcagcaacgagccg
ttcgtcgcgcgcccgcacccggccgtgccggaaggcttcccggtctattcgctgagcgat
ctcaagcggatgccggcgcagaagctgctggatatcgccgatcagctcaacatccaggaa
ggcgtggcgcgcgcgcgcaagcaggacgtgatctttgccctgctcaaggtgctgacccgc
cacggcgagggcgttgccgccgacggcgtgctggaaatcctgcccgacggcttcggcttc
ctgcgtgccgcagaagccagctacctggccggcccggacgatacctatatctcgcccagc
cagatccgtcgcttcaacctgcgcaccggcgatcacctgtccggccgcatccgcttcccg
aaggacggcgaacgctatttcgcgctgtcgatcgtcgacaccatcaatggcgagccgctg
gaagccagcaagaacaaggtgctgttcgagaacctgaccccgctgtttccacgtcggcgc
ttccggctggagcgtggcgatgggtccaccgaggacatcaccggccgcatcctggatctg
atggcgccgcagggtaaaggtcagcgcgcgctgatcgtctccccgcccaaggccggcaag
acgatgatgatgcagcaggtggccacggccatcaccagcaatcatcccgaagtgcacatg
atcgtgctgctgatcgacgagcgcccggaagaagtgaccgaaatgcagcgcaccgtgcgc
ggcgaggtcatctcctccactttcgacgaaccggccgcgcgtcacgtgcaggtcgccgag
atggtgatcgagcgcgccaagcgcctggtcgagcacaagaaggatgtggtgatcctgctc
gactcgatcacccgcctggcacgcgcctacaacaacgtggtgcccagctccggcaaggtg
ctcaccggcggtgtggatgccaatgccctgcaccgtcccaagcgcttctttggtgcggcc
cgtaacgtcgaagaaggcggctcgctgaccatcatcgccacggcgctggtggaaaccggc
agcaagatggacgaggtgatctacgaagagttcaagggcaccggcaacagcgaagtgcac
ctgaatcgtcgcatcaccgaaaagcgcgtgtacccggcgatcgacatcaaccgctcgggc
acgcgtcgcgaagatctgctgatcgagccggagctgctgcagaagatctggatcctgcgc
aagctgctgcacccgatggacgaaatcgcggcgatggaattcctgctggacaagatgaag
accaccaagtccaacgacgagttcttcagttcgatgaagcgctga
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integrated database retrieval system
