Ahniella affigens: C7S18_17490
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Entry
C7S18_17490 CDS
T05483
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
xba
Ahniella affigens
Pathway
xba02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
xba00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
C7S18_17490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xba03021
]
C7S18_17490
Transcription machinery [BR:
xba03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
C7S18_17490
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
AVP98860
UniProt:
A0A2P1PVK8
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All DBs
Position
4533926..4535779
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AA seq
617 aa
AA seq
DB search
MAGEFEPRDQQSEIKQLITKGKEQGYLTYAEVNDHLPDDVVDPEQIEDIIGMINDMGIEV
HEVAPDTETLILQETPAAQDDETATEEAIQALSAVEETGRTTDPVRMYMREMGTVELLTR
EGEIAIAKRIEEGLAQVQTALSQFPWTISLLLEEYASHLDGKKRMSEFLTGFYDLEAEQA
AITEEMLESESEVAAAEDDNDNGDGEEAGPGESGPDPAEVKRRMELFADTYEKFKAGHSK
VGGEDKKVQKLKQQIQEEFLKLKLPSIMIDGMVKRVRERVNVLRHHERVILDIVTRHGKM
PRKDFLKLFPGKETNLRWIDNESRKAVKWASTLKTCKDAVVAEQEKLIGHEGLLFLTLPE
IKEIHRAMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE
PSPEELAKKMDMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTNVESPVDSATT
TGLQETVHDVLASLTPRESKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK
LRHPSRSEQLRSFLDLD
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atggccggtgagttcgaaccccgcgaccaacagtctgaaatcaagcagctgatcaccaaa
ggcaaggaacaaggctacttgacctatgccgaagtcaacgatcacctgccggacgacgtg
gtcgatccggagcagatcgaagacatcattggcatgatcaatgacatgggcatcgaagtg
cacgaagtggcacccgataccgaaacgctgattctgcaggaaacgccggccgcccaggac
gacgagacggccaccgaagaagccatccaggcgttgtcggcggtcgaagagactggccgc
accaccgacccggtccgcatgtacatgcgcgagatgggcacggtcgaactgctgacccgc
gaaggcgaaatcgcaatcgcgaagcgcatcgaggaaggtctggcccaagtgcagacggcg
ctgtcgcaattcccatggacgatcagcctgctgttggaggaatacgcctcgcacctggac
ggcaagaagcgtatgagcgaattcctgacgggcttctatgatctggaagccgagcaggcc
gcgattaccgaggaaatgctcgagtccgaatcagaagtcgctgccgcggaagatgacaac
gacaacggtgacggcgaagaagccggccctggcgagtccggtcccgatccggccgaagtc
aagcgccgcatggaactgtttgccgatacctacgagaaattcaaagccggccacagcaag
gttggtggcgaggacaagaaggtccagaagctgaagcagcagatccaggaagaattcctg
aagctgaagctgccatcgatcatgatcgacggcatggtcaagcgcgtgcgggagcgcgtc
aacgtgctgcgtcatcacgagcgcgtgatcctcgatatcgtcacgcgccacggcaagatg
ccgcgcaaggactttttgaaactgttcccgggcaaggaaacgaatctgcgctggatcgac
aatgagtcgcgcaaggccgtgaagtgggccagcacgctgaagacctgcaaggacgccgtg
gtcgccgagcaggaaaaactgatcggccatgaaggcttgctgttcctgacgctgccggag
atcaaagaaatccatcgcgccatgtcgattggcgaagccaaggctcgccgcgcgaagaag
gaaatggtcgaggccaacttgcgtctcgtgatctcgatcgcgaagaagtacacgaaccgt
ggtctgcagttcctcgatttgattcaggaaggcaacattggcctgatgaaagcggtcgac
aaattcgaataccgccgcggctacaagttctcgacgtacgccacgtggtggattcgccaa
gccatcacccgctcgattgccgatcaggcccgcaccatccgcattccggtgcacatgatc
gaaacgatcaacaagctgaaccgcatcagccgtcagatgctgcaggagatgggccgtgag
ccgtcgcctgaggaattggcgaagaagatggacatgccggaagacaagatccgcaaagtc
ctgaagatcgccaaggaaccgatctcgatggaaacgccaatcggcgacgacgaggactcg
cacctcggcgacttcatcgaagacaccaatgtcgaatcgccggtcgattcggccacgacc
accggtctgcaggaaaccgtgcacgatgtgcttgcctcgctgacgccacgtgagtcgaag
gtgctgcgcatgcgctttggtatcgacatgaacaccgaccatacgctggaagaggtcggc
aagcagtttgacgtgacccgcgaacgcattcgccagatcgaagcgaaggccttgcgcaaa
ctgcgtcatccaagccggtcggaacaactgcggtcgttcctcgacttggattga
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