Ahniella affigens: C7S18_19300
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Entry
C7S18_19300 CDS
T05483
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
xba
Ahniella affigens
Brite
KEGG Orthology (KO) [BR:
xba00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xba03019
]
C7S18_19300 (hrpA)
Enzymes [BR:
xba01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
C7S18_19300 (hrpA)
Messenger RNA biogenesis [BR:
xba03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
C7S18_19300 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
Helicase_C
OB_NTP_bind
DEAD
AAA_22
HA2_C
AAA_19
AAA_25
SRP54
AAA_30
NACHT
Cas3-like_C_2
nSTAND3
TsaE
T2SSE
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
AVP99180
UniProt:
A0A2P1PWG4
LinkDB
All DBs
Position
5013820..5017713
Genome browser
AA seq
1297 aa
AA seq
DB search
MVPERIQRKRKIPMSVIESSADTSLDWPKLRARLDRTMLSDRHVLRREADRLAANPSADA
ATVARFLTRLNESEQRFAARAERLPNVEIDAQLPISHHADEIVRLIQKERVIVLAGETGS
GKTTQLPKLCLAAGRGVAGMIACTQPRRVAARSVARRVAEEIGTQVGQLVGFQVRFTDQV
SEHSLIKFMTDGILLAETEHDPWLNRYDTIIIDEAHERSLNIDFLLGFLNQLIPKRPDLK
LIITSATIDTQRFAKHFFNAPIVQVEGRSYPVEIRYRAPVETRDEGRGQALIQTLDEITR
QDGLGDVLVFLPGEREIRDAHRQIEQRKYRETEVLALYARLSSKEQDRVFHPGPKRRIVL
ATNVAETSLTVPRIRYVVDTGVARISRYSHRHKVQRLHIEPISQASLNQRAGRCGRVGPG
ICYRLFGADEFLQRPEFTEPEILRSSLANVILRMLSLKLSEVERFPFVERPEERALAEGF
QTLTELGLISADRRKLTPHGRIAARIPIDVKLARVLIAANERGALAEGLIIASFLSIQDP
RERPAEARQAADQAHLQWADPQSDFLSAVNLWRAYDSAHQELTQSKLRDWCERQFLNFLR
MREWRELHRQLLLIVEELGWRLGDHAATFEALHQSLLFGFPAMIGRKDEKGLYQGTRGRK
FAIFPGSALSKKPPYWLLTAAILDIQKVYAMTNARVESEWIIDAAGPLLKRNYLDPRWDR
QRGQVMADEQISLFGLILVERRPVHYGGIEPQAARDLFLNNAMPELQLDSRSNLIQKARQ
VLVRARAEEAKQRREGLLIDEAARAEWWRLRLPEDICTTNALDRYLAKIDAETEAGLLWT
LDQVLATDAALEEQFPNSLRFGPERFRLSYAFDTQAESDGVTLSLPLNWLNALPESPLAW
LVPGLLRDKVTELIRGLPKPLRRNFVPAPDFAKAFVESQPNREHDLFDTLTGFLKRVTGV
DVARDHWLQADTELPKHLRMRVQLLDEQGRNLAHSRDIGALKQQYSERARQAFASRAAKE
YAETDVRSLPTEPVPESVRTKSGLTAYPALVDRGNRVDWQVFEQAEMARTEHRQGVHRLL
RFALEPEVTKLRKQLPLAPKLALAYTPIGSPEQLRDEVLLGSLDDLLTADTGTSRSADSL
QLSEQAIRKAWFPSAVKRLSQVEAALAAYAELLPKMKPPLLGFATANYDDLKKQLSGLIH
SGFARDLPSQRLADLPRYLKAMRQRIERLLVDPRKDQSRMLIVQAFVAQLPEPRHPEYER
LRWLLEEFRVQTFAQELGTSEPVSEKRIQRLFEQVRG
NT seq
3894 nt
NT seq
+upstream
nt +downstream
nt
atggtccctgagagaatccaaaggaaacggaaaattccgatgtcggtgatcgaatccagc
gcagacaccagcctggactggcccaagctcagagcgcggctggatcggaccatgttgtct
gatcgccacgtgctgcgtcgggaggccgaccgtctggccgccaatccgagcgccgacgcc
gccacagtcgcgcggtttctgacgcgactcaacgaatccgagcagcgctttgcggcgcgc
gccgaacggctcccgaacgttgagatcgatgcgcaactgcccatcagtcatcatgccgac
gagattgtccgcctgatccagaaagaacgcgtgattgtgctggctggcgaaaccggctcg
ggcaagaccacgcagttgccaaagctctgtctggccgcaggtcgtggtgtggcgggcatg
attgcgtgcacgcagccgcgtcgcgtcgccgcgcgtagcgttgccagacgggtggctgag
gagatcggcacccaggtcgggcaactagtcgggtttcaggtgcgctttaccgatcaggtc
agcgaacactcgctgatcaagttcatgaccgacggcattctgctggccgaaaccgagcac
gacccgtggctgaatcgctacgacacgatcatcatcgacgaagcccacgagcggagtctg
aacatcgactttctgctcggctttctgaaccagctgattccgaaacgccccgacctcaag
ctcatcatcacgtcggcgaccatcgacacacagcgctttgccaagcatttcttcaacgcg
ccaatcgtgcaggtcgaaggccgcagttatccggtcgagattcggtaccgggcacccgtg
gaaacccgtgatgagggccgcggccaggcgttgatccagacgctcgatgaaatcacgcga
caggacggcctgggcgacgtgctcgtgttcttgccgggcgaacgcgaaatccgcgacgcg
catcggcagatcgagcagcgcaagtatcgcgagaccgaagtgctggcgctgtacgcgcgc
ttgtccagcaaagagcaggaccgcgtgtttcaccccgggccaaagcggcgcattgtgctc
gcgaccaatgtcgccgaaacctcgctgaccgtgccgcgcatccgctatgtcgtcgatact
ggggtcgcgcgcatttcgcgctacagccatcggcacaaggtgcagcgcctgcatatcgaa
ccgatttcgcaggccagcctgaatcagcgtgctggccgctgcggccgggtcggtccgggc
atctgttaccggctgttcggcgctgatgaattccttcagcggcccgagttcaccgagccc
gagatcctgcgttcgtcactggctaatgtgattctgcgcatgctgagcctgaagctcagt
gaggtggagcggttcccgtttgtcgagcgaccagaggaacgggcgctcgcggaaggtttc
cagacgctgaccgagctcggcctgatcagcgccgaccggcgcaaactgacgcctcacggg
cggattgccgcacgcattccgatcgatgtgaaactcgcgcgagtgctgattgccgcgaac
gaacgtggggcgctggcagagggcctgatcattgcgtcattcttgtcgattcaggacccg
cgtgaacgccctgctgaagcgcggcaggcggcggatcaagcccatctgcaatgggccgat
ccacagtcggatttcttgagtgccgtgaatctgtggcgcgcttacgacagcgcgcatcaa
gagttgacgcagtcaaagctgcgcgattggtgtgagcgccaattcctgaatttcctgcgc
atgcgcgaatggcgggagctgcatcggcagctattattgatcgtcgaggaattgggctgg
cgccttggcgaccacgcggcgaccttcgaggctttgcatcagagcctcttgttcggcttc
cccgcgatgattggccgcaaagacgaaaagggcttgtatcaaggcacgcgtgggcgcaag
ttcgcgattttccccggctcggcgctgagcaagaagccgccgtattggttgctgacggcg
gccattctggacattcagaaagtctatgcgatgaccaatgcccgggtcgagtccgagtgg
atcatcgacgctgcgggtccgctcttgaagcgtaactatctggacccacgctgggatcgc
cagcgcggtcaggtcatggccgatgaacagatcagtctgttcggcctgattctggtggaa
cgccggcccgtccattacggcggtatcgagccgcaggcagcgcgcgacctattcttgaac
aacgccatgcccgagttgcagctcgactcgcggtcgaatctgattcaaaaagccagacaa
gtgctcgtgcgggcgcgcgccgaagaggccaaacaacgtcgcgagggcttgctgatagat
gaggccgcacgtgccgaatggtggcgcctgcggttgcccgaggacatttgcaccaccaat
gccctcgatcggtacttggcgaagattgatgcagagaccgaagccggtttgctgtggacg
ctcgatcaagtcctcgccaccgatgccgcgctcgaagagcaattcccgaactcgctgcgc
tttggtccggagcgctttcgactcagctacgcgttcgacacgcaggccgagagtgatggc
gtcaccctgagcctgccgctgaactggctgaacgcgctgcccgagtcgccgttggcgtgg
ctcgtgcccgggctattgcgcgacaaggtgaccgagctcattcgtggcctgccaaagccg
ctgcgtcggaattttgtgccggcaccagacttcgcgaaggcgttcgtcgagtcgcaaccg
aatcgcgagcacgatttgttcgacacgttgacgggcttcctgaagcgcgtgaccggcgtt
gacgtggcccgagaccattggctgcaagccgacaccgaattgcccaagcatctgcgcatg
cgcgtgcaactgctggatgaacagggtcgcaatctggcgcactcgcgtgacattggcgcg
ctgaaacagcagtacagcgagcgtgcgcgccaagcctttgcgagtcgcgccgcgaaggag
tacgcggagacggacgtgcgatcgctgccgacggagcccgtgccagagtcggtgcgcaca
aaatcagggctgacggcgtatcccgcattggtggatcgcggcaatcgtgtcgattggcag
gtctttgaacaggccgagatggcgcgcaccgagcatcgccagggcgtgcatcgtctgctt
cgatttgcgctggaacccgaggtcaccaagctgcggaaacaattgccgctggcgcccaag
ttggcgctcgcgtacacgccgatcggctcgcccgagcagctgcgcgacgaggtcttgctg
gggtcgctcgatgatctgctcactgccgatacgggcacgtcgcgatcggctgattcattg
cagctgtcggaacaggcgattcgcaaagcgtggtttccgtctgccgtcaaacggctcagc
caagtggaggccgcgctcgctgcttatgcggaactgctccccaagatgaagccgccgttg
ctcggctttgcgaccgcgaactacgacgatctgaagaaacaactgagcggcctgattcat
tccggctttgctcgggacctgccgagccagcgtctggcagacctgccacggtacctgaag
gcgatgcggcaacggatcgagcgcctgctggtcgacccacgcaaggatcagtcgcgcatg
ctcatcgtgcaagcgtttgtagcccagttgccggaaccgcgacaccccgaatacgagcgc
ctgcgctggttgctggaagagttccgagtgcagacctttgcgcaagaactcgggacgtcc
gagccggtatccgagaagcgtattcagcgcctttttgaacaggtgcgtggatga
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