Pseudolysobacter antarcticus: ELE36_01515
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Entry
ELE36_01515 CDS
T06010
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
xbc
Pseudolysobacter antarcticus
Pathway
xbc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xbc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ELE36_01515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xbc03021
]
ELE36_01515
03019 Messenger RNA biogenesis [BR:
xbc03019
]
ELE36_01515
Transcription machinery [BR:
xbc03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ELE36_01515
Messenger RNA biogenesis [BR:
xbc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ELE36_01515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
NACHT
AAA_25
S1CSD-TOTE-2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QBB69158
UniProt:
A0A411HFA2
LinkDB
All DBs
Position
complement(345431..347122)
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AA seq
563 aa
AA seq
DB search
MRGLPVSNIENKESNESVAPESHAQPAQNVQPPSPVVREGNAESAASGGGAPETNSASGD
NAAPAANPQGQPRPPREGQGQRPQRQRHPRQRNRENPREGGGGENAGGGGGGGRNNGGRN
SMSNAEREEIESENAEARNTGPLINLTELKLKSASDLLALADTLGIQEGVARARKQDVVF
NILKAHAKAGGGIYGEGVLEILQDGFGFLRTWESSYLAGPDDIYVSPSQIRRFNLRTGDF
ITGRIRPPKEGERYFALLKVDDINNEPPEASKNKILFENLTALFPRKRFHLERGNGSTED
ITPRIIDLVSPIGKGQRGLIVSPPKAGKTMMLQNIATSISLNHPDAHLIVLLIDERPEEV
TEMQRSVRAEVVSSTFDEPATRHVQVAEMVIERAKRLVEHKRDVVILLDSITRLARAYNT
VVPSSGKVLTGGVDANALQRPKRFFGAARNVEEGGSLTIIATALVETGSKMDEVIYEEFK
GTGNMEVHLDRRIGEKRVYPAININRSGTRREELLIDPDALQKIWILRKLLHPMDELAAM
EFMLDKMKNTKTNDEFFAFMKRG
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgcgaggtttgcccgtgtctaatatcgaaaataaagaaagcaacgaatctgttgcgccc
gaatcccatgctcagccagcacagaatgtgcagccgccgagtccggtcgtgcgcgaaggc
aatgccgaatctgcagccagcggcggcggcgcacctgagacgaattccgcctccggcgac
aatgccgcgccggcagcgaatccgcagggccaacctcgtccaccgcgtgaaggccaaggc
cagcgcccgcaacgtcagcgtcacccacgccaacgcaatcgcgagaatcctcgtgaaggt
ggcggtggcgagaatgctggcggtggcggtggcggtggccgcaacaatggcggccgtaac
agcatgagcaacgccgagcgcgaggaaatcgagagcgaaaatgccgaggcacgcaatacc
ggcccgctgatcaacctcaccgagctcaaactcaagtccgcatccgacttgctggcgctg
gccgatacgctcggcatccaggaaggcgtggcgcgtgcgcgcaagcaggatgtggtgttc
aacatcctcaaggcgcatgccaaggccggcggcggcatttatggcgaaggcgtactggaa
atcctgcaggacggtttcggctttctgcgcacgtgggaatcatcgtatctcgccggtccc
gatgacatctatgtctcgccgtcgcagatccgtcgtttcaatctgcgcaccggcgacttc
atcaccggccgcattcgtccaccgaaagaaggcgagcgctatttcgcgctgctcaaggtc
gacgacatcaacaacgagccgccggaagcgtcgaagaacaagatcctgttcgagaatctt
accgcgctgttcccgcgcaagcgttttcacctcgaacgcggcaacggttccaccgaagac
atcacgccgcgcatcatcgatctggtgtcaccgattggcaaaggccagcgcggcctgatc
gtgtcgccgccgaaagccggtaaaacgatgatgttgcagaacatcgcgacctcgatttcg
ttgaatcatcccgatgcgcacctgatcgttttgctgatcgacgagcgtccggaagaagtg
accgaaatgcagcgctcggtgcgcgccgaagtcgtgtcatcgaccttcgacgaacccgcg
acgcgccacgtacaagtcgccgaaatggtgatcgaacgtgcaaaacgtctggtcgaacac
aagcgcgatgtggtgatcctgctcgattcgatcacacgtctggcgcgtgcctacaacacc
gtggtaccaagctccggcaaggtgctgaccggcggtgtggatgcgaatgcgctgcaacgc
ccgaaacgttttttcggagctgcacgtaacgtcgaggaaggtggctcgctgaccatcatc
gccaccgcgctggtcgagaccggctcgaaaatggacgaggtgatctacgaggaattcaag
ggcaccggcaacatggaagtgcatctggatcgtcgtatcggcgagaagcgtgtatacccg
gcgatcaatatcaatcgctccggcacacgtcgtgaggagttgctgatcgatccggatgcg
ctgcagaaaatctggattctgcgcaagttgctgcatccgatggatgagctcgcggcgatg
gaattcatgctcgacaagatgaaaaacaccaagaccaacgacgagttcttcgctttcatg
aaacgcggctag
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