Pseudolysobacter antarcticus: ELE36_07645
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Entry
ELE36_07645 CDS
T06010
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
xbc
Pseudolysobacter antarcticus
Pathway
xbc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xbc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ELE36_07645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xbc03019
]
ELE36_07645
03009 Ribosome biogenesis [BR:
xbc03009
]
ELE36_07645
Enzymes [BR:
xbc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ELE36_07645
Messenger RNA biogenesis [BR:
xbc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ELE36_07645
Ribosome biogenesis [BR:
xbc03009
]
Prokaryotic type
rRNA processing factors
ELE36_07645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
zf-C2H2_FBX41
Motif
Other DBs
NCBI-ProteinID:
QBB70246
UniProt:
A0A411HIA8
LinkDB
All DBs
Position
complement(1811082..1814483)
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AA seq
1133 aa
AA seq
DB search
MKRMLINATQREELRVAIVDGQSLFDLDLEIPSKEQKKANIYKGRITRVEPSLEACFVEY
GGERHGFLPLKEISRDYFATGVDPHRGGIRELLKEGQDIVVQVEKEERGSKGAALTTFIS
LAGRYLVLMPNNPRAGGVSRRIEGDDRTNLKEVMDELKLPDDMGLIIRTAGMGRDAEELQ
WDLDYLLQLWKAISEAALTRAAPFLIYQESKLIIRALRDYLRNDIGEILIDHEALYNDAR
EFVQQVMPQNLRKLKLYQDNVPLFSRYQIETQIENAFERSMRLPSGGSIVIDQTEALTAI
DINSSKATKGGDIEETAFNTNLEAATEIARQLRLRDMGGLVVIDFIDMDSPRHQREVEDR
LKDALKVDRARVQIGRISRFGLLEMSRQRLRPSLGESSQMVCPRCHGHGRFRSVESLSLS
ALRLVEEHAMKENTGQVLVQAPSDVANFLLNEKRKSVTEIELRHDVAVIIVADDKLETPN
IEIERIRSADMGDGSKASYERVTPIVASAPPQVAKPSEEPEQPAVSGVVRATPAPIRPDT
EDQPARTAKSGGFFAWLRSLFAGGETPPAAASNNKSSSQRAKPNNNARNKPNRERDRDGS
REKSGNRPDREKQPQPAKAARAEGGQQRRDGQRPAAEAKSAANEQRGPRPAQNAAAKGEK
NAAQRAVQIDTNGASAVGAGNDAKRQQPKPPAPVAAAQPAAQTAIPGSAEDVTEAAAAEG
ARSRRRGRRGGRRRRRNEGGVDAEGISAENSSGQDLVFDFDDEDAGPEQVKPQVQQKPAN
PNVAAAASAAQAPIAMAAEKSAAPAPAAHISADLADSVKTESPVAASAPAPPTASTPAPA
VEAQGRPHVSDRGGLKAAPQHVVPASTPMPTPPAAAQPVAPSPAPVATAPVVTETPKPVV
VAQPAVAPVAAAPVADVAPVALRPWEHAPPPPPVVRPVATTPAPTATTSVSASVPTPSAS
PSVTPSAPVPTISTPANATETKPAASANPTSTATVVAAAAAPTPATVRPVQEAANQLPLR
MPAQVDATPNADVAKPALPPTPAAAPVAPKVDVAAVVAAPIATPSAAPIALVAPVAPASV
TPPVVVVSHPAAAAPAVTAAQPSTATPVVAPEHKEAVKAVPDAAEKSTDPTKD
NT seq
3402 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgcaactcagcgagaagagttgcgcgtggccatcgtcgat
ggtcagtccctgtttgacctggacctggaaatcccttccaaggaacagaaaaaagccaat
atctacaagggtcgcatcacgcgcgtcgagccgtcgctcgaagcgtgtttcgttgaatac
ggcggcgaacgccacggctttctgccgctgaaggaaatctcgcgcgactatttcgccacc
ggtgtcgatccgcaccgcggcggcatccgtgagttgctcaaggaaggtcaggacatcgtt
gttcaggtcgagaaagaagaacgcggcagcaagggcgctgcgctgaccacgttcatttcg
ctggctggccgttatctggttttgatgccgaacaatccgcgcgccggtggcgtgtcgcga
cgcatcgaaggcgacgatcgcaccaacctcaaagaggtgatggacgagctcaagctgccc
gacgacatgggcctgatcatccgcaccgccggcatgggccgcgatgccgaagagctgcaa
tgggatctcgactatctgctgcaactctggaaagccatttccgaagccgcgctgacgcgc
gcagcgcccttcctgatctaccaggaatccaaactcatcatccgtgcgctgcgcgattac
ctgcgcaacgacatcggtgaaatcctgatcgatcacgaggcgctctacaacgacgcgcgt
gaattcgtgcagcaagtgatgccgcagaacctgcgcaagctcaagctgtatcaagataac
gtaccgctgttctcgcgttaccagatcgaaacgcagatcgaaaatgcgttcgagcgcagc
atgcgcctgccgtcgggcggctcgatcgtgatcgaccagaccgaagccctgaccgcgatc
gacatcaactcgtcgaaagccaccaagggcggcgacatcgaagaaaccgcgttcaatacc
aacctcgaagctgcgaccgaaatcgcgcgccagttacgcctgcgcgacatgggcggcctc
gtggtgatcgacttcatcgacatggacagcccgcgccatcagcgcgaagtcgaagatcgc
ctgaaagacgcgctcaaggtggatcgtgcgcgcgtgcagatcggtcgcatctcgcgtttc
ggcctgctcgaaatgtcacgtcagcgcttgcgtccgtcgctcggtgaatcgagtcagatg
gtttgtccgcgctgccacggccacggacgtttccgcagtgtcgaatcgctgtcgttgtcg
gcgctgcgtctggtcgaagaacatgcgatgaaggaaaacaccggccaggtgctggtgcag
gcgccgtcggatgtcgccaacttcctgctcaacgaaaaacgtaaaagcgttaccgaaatc
gaattgcgtcacgacgttgcggtcatcatcgtcgccgatgacaaactcgaaacgccgaac
atcgaaatcgagcgcatccgctcggccgacatgggcgacggcagcaaagcgagctatgag
cgcgtgacccccatcgtcgcatccgctccgccgcaagtcgccaagccgagtgaagagccg
gaacagccagcggtcagcggcgtggtgcgcgcaacaccggcgccgattcgtcccgatacc
gaagaccagccagcacgcaccgcaaaaagcggcggtttcttcgcgtggttgcgcagcctg
tttgcgggcggcgaaaccccgccggcagcggcatcgaacaacaagtcatcgtcgcagcgc
gccaagccgaacaacaatgcacgcaacaagccgaaccgcgaacgtgatcgcgacggttca
cgcgagaaatcgggcaaccgcccggaccgcgaaaaacagccgcagccggccaaagcagcg
cgcgccgaaggtggtcaacagcgtcgcgacggtcaacgtcccgccgccgaagcgaagtcg
gctgcaaacgaacaacgcggcccgcgtcctgcacaaaacgccgctgcaaaaggcgagaaa
aacgcggcacaacgtgcggttcagatcgacaccaatggtgcatctgctgttggggccggc
aacgatgcaaaacgccagcagccgaagccaccggcaccggtcgcggcagctcaacctgcg
gcacaaactgccatacccggaagcgcggaagacgtgaccgaagcagctgccgccgagggc
gcacgttcgcgtcgtcgtggtcgtcgcggtggtcgtcgtcgtcgtcgcaacgaaggtggt
gtggatgcggaaggcatttcggcggagaacagctcaggccaggatctggtattcgacttc
gatgacgaagacgccggtccggaacaggtaaagccgcaggtacaacagaagccagccaat
ccgaacgtggctgccgcagcaagtgctgcccaagctccgattgcgatggctgctgaaaaa
tcggcagcgcctgcacctgcagcgcatatttcagccgatcttgcggatagcgtgaaaacg
gaatcgccggtagcagcgtcagcccccgctccccctactgcatcgacaccggcaccagcc
gtcgaagcgcaaggccggccgcatgtgagcgatcgtggtggcctcaaagccgcgccacag
catgtcgtgccagcatcgacaccgatgcctacgccgccagcggcagcgcaacctgttgcg
ccatcgcccgcaccggtagcaaccgcgccagtcgtgactgaaacgccgaaaccggtcgtc
gtagcgcaacccgctgttgctcccgtagcagctgcaccggttgccgatgttgcgcccgta
gcactacgtccgtgggaacatgcgccaccgccgccaccggttgttcgaccggtggcgaca
acgcctgcgccgaccgcaacgacctcggtatcagcatcggttccaacgccgtcggcaagt
ccctcggtcacaccatctgcaccggtgccgacaatttcaacgccggctaacgccacggaa
acgaagcccgctgcatccgctaatccgaccagcacagcgacggttgttgccgctgctgct
gcgccgacgccggcaactgtccgtcccgtgcaggaagccgcgaatcagctgcctttgcgt
atgccagcgcaggtcgatgcgacaccgaatgctgacgtcgcgaaaccggcgttgccgccg
acacctgccgcagcacccgttgcaccgaaggtcgacgtagccgcggttgttgctgcgccg
atagcgacaccatcggcggctcccatcgccctggttgcgcctgtagcaccggctagcgtc
acgccgccagttgttgttgtatcgcatccggcagctgccgctccggcggtgacagcggct
cagccgtcaacggcaacaccggtagtcgcgcccgagcacaaagaagctgtgaaggccgtg
ccagacgctgcggaaaaatccaccgacccgacgaaagactag
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