Pseudolysobacter antarcticus: ELE36_09405
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Entry
ELE36_09405 CDS
T06010
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
xbc
Pseudolysobacter antarcticus
Brite
KEGG Orthology (KO) [BR:
xbc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
xbc03009
]
ELE36_09405 (rlmD)
Enzymes [BR:
xbc01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
ELE36_09405 (rlmD)
Ribosome biogenesis [BR:
xbc03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
ELE36_09405 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
RrnaAD
MTS
TRAM
PCMT
Methyltransf_15
Cons_hypoth95
Methyltransf_11
TRM5-TYW2_MTfase
Methyltr_RsmB-F
Methyltransf_23
Methyltransf_12
Methyltransf_4
Ubie_methyltran
Bd3614-deam
FtsJ
DOT1
Motif
Other DBs
NCBI-ProteinID:
QBB70563
UniProt:
A0A411HJ87
LinkDB
All DBs
Position
2219302..2220660
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AA seq
452 aa
AA seq
DB search
MLDRRARLTATHYFSIAGGTVSQTLELEITDLIHDGRGVAHIDGKAIFVSGALPGERVLA
RMNARHRHFDEAQTEEVLLASPDRVEPRCAHFGICGGCSLQHLSPAGQIAAKQKILLENL
ERIGKVTPTNMLAPLTDLAWGYRRKGRLSVKYVEKKGRLLVGFRENNGKFVADIKRCEVL
LPAVGDRIEALATLIGGMDALRELPQIEIAAGDDLVALIFRHLKPLSEKDRELLLAFAKS
ENLGVFLQPGGNDSVHALWPEDAHLSFRIPASEIDIEFKPLDFIQINEGINLKMIAQTID
LLDLQPKDRVLDLFCGLGNFTLPLARRAGQVTGVEGEASLVARANTNARHNNLHNVDFFS
ANLFEDQRATPWAKQKYDKLLLDPPRSGAAEILEYLPGRSVQRVVYVSCHPGSLARDAGI
LVQRHGFKLSAAGVMDMFPHTAHVESIALFER
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaccgtcgagcacgattgactgcgacgcactatttctcaattgctggtggaacc
gtgtcgcaaacgcttgaactcgaaattaccgatttgatccatgacggccgcggcgtggcg
cacatcgatggcaaggccatttttgtcagcggtgcgttgcccggcgagcgcgtacttgcg
cgtatgaatgcgcggcatcggcatttcgatgaagcgcagaccgaggaagttctgctcgca
tcgccagatcgagtcgaaccgcgctgcgcccatttcggcatctgcggcggctgctcgttg
cagcatttgtcgccggcaggacagattgccgcaaagcaaaaaattctgctggaaaatctc
gaacgcatcggcaaagtcacgccgacaaatatgctggcaccgctcaccgatctggcgtgg
ggttatcggcgcaaggggcggttgtcggtcaagtacgtcgagaaaaaaggtcgtttgctg
gtcggtttccgcgagaacaacggcaagtttgtcgccgacataaaacgttgcgaagtgctg
ctgccggcggtgggtgatcggatcgaagcgctcgcgaccttgatcggtggcatggatgca
ttgcgcgaactgccgcagatcgaaatcgctgcgggcgatgatctggtcgcgttgattttt
cgccatctcaagccgctgtcggaaaaagacagagagctgttgctggcgtttgccaagagc
gaaaatctcggtgttttcctgcagcccggcggcaacgacagcgtgcacgcgttgtggccg
gaagatgcgcatctgagtttccgcattccggcttccgagatcgacatcgaattcaagccg
ctggattttatccagatcaacgaaggcatcaatctcaagatgatcgcgcagacgatcgac
ctgctagatctgcagccgaaggatcgcgtgcttgatctgttttgcggactcggcaatttc
accttgccgctggcgcgtcgcgctggccaagtcacgggcgtggagggcgaggcgagtctg
gtcgcgcgcgcaaatacgaatgcgcgacacaataatctgcacaacgtcgatttcttcagc
gctaatttgttcgaggatcagcgcgcgacaccgtgggccaaacagaaatacgacaagctg
ctgcttgatccgccgcgctccggcgccgccgaaattctggagtatttgccaggccgtagc
gtgcagcgcgtggtatatgtttcatgtcatccgggttcgctggcgcgcgacgctggcatc
ctggtgcaacgtcacggctttaaactcagcgccgccggcgtgatggacatgtttccgcat
accgcgcacgttgaatcgattgcgctgtttgaacgctga
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