Pseudolysobacter antarcticus: ELE36_19060
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Entry
ELE36_19060 CDS
T06010
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
xbc
Pseudolysobacter antarcticus
Brite
KEGG Orthology (KO) [BR:
xbc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xbc03019
]
ELE36_19060 (hrpB)
Enzymes [BR:
xbc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ELE36_19060 (hrpB)
Messenger RNA biogenesis [BR:
xbc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ELE36_19060 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
ResIII
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QBB72299
UniProt:
A0A411HP67
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All DBs
Position
4434022..4436535
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AA seq
837 aa
AA seq
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MVAVSAAEFPIQTLLPELRSTLAAHTRLVLEAPPGAGKTTQVPLALLDQPWLAGGKILLL
EPRRIAARAAAEFMAAQLGEAVGETVGYRIRFEAKISSRTRIEVVTEGILTRLLQSDPEL
PGIGAILFDEFHERHLHGDLGAALALDVQASLRPELRLLVMSATLDGERIARWLDAPRLS
SAGRSYPVRIEYPSAKAQEDWPFHLKRVAQQALTESEGDVLVFLPGKREIDRARDVLSAL
AVDNTLTLVPLHGELSLSEQHLALRPAENHSRRIVLATNVAESSVTLPGIRAVIDLGQAR
EPRFDAQSGFTRLESVAISQASADQRAGRAGRVAAGVCYRLWPQSRRLDPARTPEIAQVE
LSTLSLELAAWGSGTLQWLDAPPSGALAQGRELLGLLGALDDAARLTPLGRDMLALGTHP
RLAAAALRASTQQRSLACDLLALIEARSPLRGESGRSDDFRNRWQALDAWRREGARAARN
LGADSGALAALDQAASSWRRRLGLRERGDSRTDLLTLGNLLLHAFPDRVARQDPDNPRRY
TLSNGRGARLHENTALYGEPWLVVVDLRFDERDSLILAAAPFDPALLERDFAHRFVRERI
AHFNRDTRAIDVYEEQRFAALVLERKTGMRVDAAESTRLLLAGVRELGLEVLPWSDHAIE
LRLRIGCLRGWCPELNLPDIGDVALLATLDEWLGPFLNGKTRLSSLRAEELGEALSAMLD
FNTRRQLDEHAPTALRVPSGMERKLSYTPDQPPVLAVKLQELFGLADTPRIAKGRIAVVL
HLLSPAQRPIQVTQDLKSFWERTYPEVRKELKGRYPKHPWPEDPWSATPTARAKPRE
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atggttgccgtgagcgctgcagaatttccgatccagaccctcctacccgagctgcgcagt
acgctcgccgcacatacgcgcctcgtactcgaagcgccgcccggtgcgggcaagaccacg
caagtgccgctggctttgctcgatcaaccctggctcgctggcggaaaaattctactgctc
gaaccacgccgcatcgccgcacgcgcggcagcggaattcatggccgcgcaactcggtgag
gcagttggcgaaacggtcggttatcgcatccgtttcgaagccaaaatatcgtcgcgtacg
cgcatcgaagtcgtcaccgaaggcatcctcacgcggcttttgcagagcgatccggaactc
cccggcatcggcgcgatcctgttcgacgaattccacgaacgtcacctgcatggcgatctc
ggcgccgcgctcgcgcttgatgtgcaggcgagtctgcgccccgaactgcgcctgctggtg
atgtcagccacgctggatggtgagcgcatcgcgcgctggctggacgcgccgcgcctgagc
agcgcgggccgcagttatccggtgcgcatcgagtatccgtcggccaaggcgcaggaggat
tggccattccatctcaagcgcgtcgcgcagcaggcgctgacagaaagcgaaggcgatgtg
ctggtatttctgccgggcaaacgcgagatcgatcgagcgcgagatgtgctgtccgcgctc
gccgtcgacaatacgctgacgctcgtgccgctgcatggtgaactatcgctgtccgagcaa
catctcgccttgcgccccgccgaaaatcattcgcggcgcatcgtgctcgcgaccaatgtc
gccgaatccagcgtgaccttgccgggcattcgcgcggtgatcgatctgggccaggcgcgt
gagccgcgcttcgatgcgcaaagcggattcacgcgactggaaagcgtcgcgatttcgcaa
gcctcggccgatcagcgtgccggccgcgcaggtcgtgttgccgccggggtgtgttaccgg
ttgtggccacaaagccggcgtcttgatcccgcgcgcacgccggaaattgcacaagtggaa
ttatccacattgtcgctcgaactcgcggcgtggggttccggtaccttgcaatggctggat
gcgccgccgagtggtgcgctcgcgcaaggccgcgaactgctcggtctgctcggtgcgctg
gatgatgcggcgcgtttgacgccgctcggtcgtgacatgctcgcactcggcacgcatccg
cgtctcgccgctgcggcattgcgtgcatcgacgcaacagcgctcgctggcctgcgatctg
ctcgcgctgatcgaggcgcgcagcccgctgcgaggtgagagtgggcgcagcgatgatttc
cgcaaccgttggcaagcgctcgatgcatggcgtcgcgaaggcgcgcgtgcggcgcgtaac
ctcggtgcggatagcggcgcgctcgccgcactcgatcaggcggcgagcagttggcgtcgt
cgtcttggtttgcgcgagcgtggtgacagtcgtaccgatctgctgacgctcggcaatttg
ttgttgcatgcgtttcctgatcgcgtcgcacggcaagacccggacaatccgcggcggtac
acgctgagcaacggacgcggcgcgcgcctgcacgaaaatacggcgctgtatggcgagccg
tggctggttgtggtcgacctgcgctttgacgaacgcgacagtctgattctcgccgccgcg
ccgttcgatccggcgttgctggaacgcgattttgcgcatcgtttcgtgcgcgaacgcatc
gcacatttcaatcgcgatacccgcgctatcgacgtttacgaggaacaacgtttcgccgca
cttgtgctcgaacgcaagaccggcatgcgcgtggatgcggcggagtcgacgcgcttgctg
ttagccggcgtgcgcgaacttggccttgaagttttgccgtggagcgatcacgccatcgag
ctgcgcctgcgcatcggctgcctgcgcggctggtgcccggagttgaatctgcccgatatc
ggcgatgtcgcattgctggcgacattggacgaatggctcgggccattcttgaacggcaag
acgcgactgagttcactgcgcgccgaagagctcggtgaagccttgtctgccatgctcgat
ttcaacacgcgccggcaactcgatgagcacgcacccaccgcgctgcgcgtgccgagcggt
atggaacgcaagttatcgtacacaccggatcaaccgcccgtgctcgcagtgaaattgcag
gagctgttcggcctcgccgacacgccgcgcattgccaagggtcgcatcgccgtcgtgctg
cacctgctgtcgccagcgcagcgtccgatccaggtcacgcaggatctgaaaagtttctgg
gagcgcacctatcccgaagtccgcaaggagctgaaaggccgttatccaaaacacccgtgg
ccggaagatccgtggtcggccacaccaaccgcgcgcgccaagccacgcgagtga
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