Xanthomonas bundabergensis: AB3X10_06230
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Entry
AB3X10_06230 CDS
T10887
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
xbn Xanthomonas bundabergensis
Brite
KEGG Orthology (KO) [BR:
xbn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xbn03019
]
AB3X10_06230 (hrpA)
Enzymes [BR:
xbn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AB3X10_06230 (hrpA)
Messenger RNA biogenesis [BR:
xbn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AB3X10_06230 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
WHD_HA2
AAA_19
nSTAND3
AAA_30
AAA_25
NACHT
T2SSE
SRP54
nSTAND_NTPase5
ABC_tran
TsaE
AAA_23
PhoH
Motif
Other DBs
NCBI-ProteinID:
XEA92162
LinkDB
All DBs
Position
1475834..1480021
Genome browser
AA seq
1395 aa
AA seq
DB search
MSTIEKHLATRLRERRAAIDGALTRDRGRLMGLWSRWQAAPGNPALEAAFEQALGQSRAR
CEARAAAQPAITLDDQLPIAREAERIVALIRAHQVVVIAGETGSGKTTQLPKLCLAAGRG
AAGMIGCTQPRRLAARAVAARVAEELRTPVGGAVGFQVRFNDRVGEETRIKFMTDGILLA
EIASDRWLSSYDTIIVDEAHERSLNIDFLLGYLKQLLRKRPELKVIVTSATIDTARFAEH
FDGAPVISVEGRTYPVEVRYRPLEEPGLESGDSGLAEAREGQRSPRTAVANPQSPIPNPG
LTVNDAIVAAVDEITRLDPRGDVLLFLPGEREIRDAHQALERRKYRETEVLPLYARLSNS
DQDRVFNPGPRRRLVLATNVAETSLTVPRIRYVVDPGYARVKRYSPRQKLDRLHIEPISQ
ASANQRKGRCGRVAEGICYRLYAEADFQARPEFTDPEIRRSSLAGVILRMLQLGLGRIED
FPFLEPPDERAVADGWQQLVELGAVGEADRHGLRKLTEIGRKMARLPVDVKLARMLVAAQ
QHGCLRPMLVIAAFLGIQDPRERPPEAREAADNAHAKFADARSEFVGILRLWDGYRQAHE
ELTQSKLRDWCGRHFLGFLRMREWRELHRQLHLLCEELGWSEEPAAASLLPLLAGAASPP
PARDAETSARATRGQLHRAARLAREGRSEPASAPAPTEPRPAAPADPADDAPRASERERA
AAYQALHRALLAGLPTQVGHRTEKGDFLAPRQRRFLLFPGSTLARKPPPWVLPATLLDTQ
KVWGLTNAAVEPDWVIAELPHLLARKHFDPHWSRAQGQVLASEQISLFGLVLAPKKPVHY
GRIDPPGAHELFVRQGLVPGEINTRASFVADNQKVLAQAHEEEAKLRRAGIVADEDWQAR
WYLDRIPGEIHSAAGLDAWWKALPPEQRRTLQWTLTDLLPGEGSEADRYPKYFALGDARL
ALHYRFEPGAADDGVTLEVPLHLLNALDPARLSWLAPGFVADKAAALIRSLPKALRRNYV
PAPDFARAFYEAFPQPGADDIRGELARFLQRATGAALAALDFDDSALEPHLRMNLRVRDD
AGKVLAESRDLDALRARFGDRAGQAFAARAGREMAAAGLREFPSVPIPLQVPGEAGVPAY
PALVDEGEAAALRIFADRAQAEAAHPRGVRRLLEIALADKVKQARKQLPVSPKTGLLYAA
IESQERLRGDLVDAALNALLEDGLDAIRDPGSFAQRRDAAGKQLFGEAMERLKLAEAIMG
AAAELKPQLESPLMGWASGNLDDLRAQLAALVHPGFLRETPATALAQFPRYLRAMILRAE
RAKRDPARDQARMLELKPFADALADAAAAGRSADPQWQALRWDLEELRVSLFAQELGAKP
GISAKKLAQRVVGVR
NT seq
4188 nt
NT seq
+upstream
nt +downstream
nt
atgagcactatcgaaaaacacctggccacccggctgcgcgagcgccgcgccgcgatcgac
ggggcgctgacccgcgaccgcggccgcctgatgggcctatggtcgcgctggcaggccgcg
cccggcaatcccgcattggaggcagcgttcgagcaggcgctgggccagtcgcgcgcgcgc
tgcgaggcgcgcgcggcggcgcagccggcgatcaccctggacgaccagctgccgatcgcg
cgcgaggccgagcgcatcgtggcgctgatccgcgcgcaccaggtggtggtcatcgccggc
gagaccggctcgggcaagaccacgcagctgccgaagctgtgcctggccgccggccgcggc
gccgccggcatgatcggctgcacccagccgcggcgcctggccgcgcgcgcggtggccgca
cgcgtggccgaggaactgcgcacgccggtgggcggcgcggtgggcttccaggtgcgcttc
aacgaccgggtcggcgaggagacccggatcaagttcatgaccgacggcatcctgctggcc
gagatcgccagcgaccgctggctgtccagctacgacacgatcatcgtcgacgaggcgcac
gagcgcagcctcaacatcgatttcctgctcggctacctcaagcagttgctgcgcaagcgc
ccggagctgaaggtgatcgtgacctcggcgacgatcgacaccgcgcgcttcgccgagcat
ttcgacggcgcgccggtgatcagcgtcgagggccgcacctatccggtggaagtgcgctac
cggccgctggaagagccgggattggagagtggggattcgggattggcagaagcgcgagaa
ggccagcgctcgccgcgaacggccgttgcgaatccccaatccccaatccccaatcccggc
ctcacagtcaacgacgcgatcgtggccgcggtggacgagatcacccggctggacccgcgc
ggcgacgtgctgctgttcctgcccggcgagcgcgagatccgcgacgcgcaccaggcgctg
gagcggcgcaagtaccgcgagaccgaggtgctgccgctgtacgcgcggctgtccaacagc
gaccaggaccgggtgttcaatcccggcccgcggcggcgcctggtgctggccaccaacgtc
gccgagacctcgctgacggtgccgcggatccgctacgtggtcgatccgggctatgcgcgg
gtcaagcgctacagcccgcggcagaagctggaccggctgcacatcgagccgatctcgcag
gccagcgccaaccagcgcaagggccgctgcgggcgcgtggccgaaggcatctgctaccgg
ctgtacgccgaggccgatttccaggcgcggccggaattcaccgatccggagatccgccgc
tccagcctggccggggtgatcctgcgcatgctgcagctgggcctggggcggatcgaggac
ttcccgttcctggagccgccggacgagcgcgcggtcgccgatggctggcagcagctggtg
gaactgggcgcggtcggcgaggccgaccgccacggcctgcgcaagctcaccgagatcggc
cgcaagatggcgcggctgccggtggacgtgaagctggcgcggatgctggtggccgcgcag
cagcacggctgcctgcggccgatgctggtgatcgccgcgttcctgggcatccaggacccg
cgcgaacgcccgccggaggcgcgcgaggcggccgacaacgcgcacgccaagttcgccgat
gcgcgctcggaattcgtcggcatcctgcgcctgtgggacggctaccggcaggcgcacgag
gagctgacccagtccaagctgcgcgactggtgcgggcgccacttcctcggcttcctgcgc
atgcgcgagtggcgcgaactgcaccgccagctgcacctgctgtgcgaagagctgggctgg
agcgaagagccggcagcggcctcgctgttgccgctgctggccggtgcggcgtcgccgccg
ccggcgcgcgatgccgagaccagcgcgcgcgccacgcgcgggcaactgcaccgcgccgcg
cggctggcgcgcgaagggcgcagcgaacccgcgtcggcgccagcgcccaccgaacccagg
cctgcagcgccggccgacccggccgacgatgcgccgcgcgccagcgagcgcgaacgcgcc
gcggcctaccaggcgctgcatcgcgcgctgctcgccggcctgccgacgcaggtcggccac
cgcaccgagaagggcgatttcctggccccgcggcagcgccgcttcctgctgttccccggc
tcgacgctggcgcgcaagccgccgccgtgggtgctgccggcgacgctgctggacacgcag
aaggtgtggggcctgaccaatgccgcggtcgagccggactgggtcatcgccgagctgccg
cacctgctggcgcgcaagcacttcgatccgcactggtcgcgcgcgcagggccaggtgctg
gcgtctgagcagatcagcctgttcgggctggtgctggcgccgaagaagccggtgcactac
ggccgcatcgacccgcccggcgcgcatgaactgttcgtgcgccagggcctggtgccgggc
gagatcaacacccgcgccagcttcgtcgccgacaaccagaaggtgctggcgcaggcgcac
gaggaagaggccaagctgcgccgcgccggcatcgtcgccgacgaggactggcaggcgcgc
tggtacctggaccgcattcccggcgagatccattcggcggcgggcctggacgcgtggtgg
aaggcgttgccgccggagcagcggcgcacgctgcagtggacgctgaccgacctgctgccc
ggcgaaggcagcgaggccgaccgctatccgaagtatttcgcgctcggcgacgcacggctg
gcgctgcactacaggttcgagccgggcgccgccgacgacggcgtgaccctggaggtgccg
ctgcacctgctcaacgcgctggacccggcgcggctgtcgtggctggcgccgggcttcgtc
gccgacaaggcggcggcgctgatccgcagcctgcccaaggcgctgcgccgcaactacgtg
ccggcgccggacttcgcccgcgcgttctatgaagccttcccgcagcccggcgccgacgac
atccgcggcgagctggcgcgcttcctgcaacgcgccaccggcgcggcgctggccgcgctg
gatttcgacgacagcgcgctggagccgcacctgcgcatgaacctgcgcgtgcgcgacgac
gccggcaaggtgctggccgagtcgcgcgacctggacgcgctgcgcgcgcgtttcggcgat
cgcgccgggcaggccttcgccgcgcgcgccgggcgcgagatggccgcggccgggctgcgc
gagttcccgtccgtgccgatcccgctgcaggtgccgggcgaggccggggtgccggcgtat
ccggcgctggtcgacgaaggcgaggcggcggcgctgcgcatcttcgccgaccgcgcgcag
gccgaggccgcgcatccgcgcggcgtgcgccgcttgctggagatcgcgctggccgacaag
gtcaagcaggcgcgcaagcaattgccggtgtcgccgaagaccgggctgctgtacgcggcg
atcgagtcgcaggagcggctgcgcggcgacctggtggacgcggcgttgaacgcgctgctc
gaggacgggctggacgcgatccgcgacccgggcagcttcgcccagcgccgcgacgcggcc
ggcaagcaactgttcggcgaggcgatggagcggctgaaactggccgaggcgatcatgggc
gcggcggcggaactgaagccgcagctggagtcgccgctgatgggctgggccagcggcaac
ctcgacgatctgcgcgcgcagctggcggcgctggtgcatccgggcttcctgcgcgaaacc
ccggccacggcgctggcgcagttcccgcgctacctgcgcgcgatgatcctgcgcgccgaa
cgcgccaagcgcgatccggcgcgcgaccaggcgcggatgctggaactcaagcccttcgcc
gatgctcttgcggacgccgccgcggccgggcgcagcgccgacccgcagtggcaggcgctg
cgctgggacctggaggaactgcgcgtatccctgttcgcgcaggagctgggcgccaagccc
ggcatctcggccaagaaactggcgcagcgggtggttggagtgcggtga
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