Xanthomonas bundabergensis: AB3X10_08530
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Entry
AB3X10_08530 CDS
T10887
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
xbn Xanthomonas bundabergensis
Pathway
xbn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xbn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AB3X10_08530 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xbn03019
]
AB3X10_08530 (rnr)
03016 Transfer RNA biogenesis [BR:
xbn03016
]
AB3X10_08530 (rnr)
Enzymes [BR:
xbn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AB3X10_08530 (rnr)
Messenger RNA biogenesis [BR:
xbn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AB3X10_08530 (rnr)
Transfer RNA biogenesis [BR:
xbn03016
]
Prokaryotic type
tRNA degradation factors
AB3X10_08530 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
RNase_II_C_S1
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
XEA92593
LinkDB
All DBs
Position
2014464..2016926
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AA seq
820 aa
AA seq
DB search
MTNRKAKSGKPGKSASHDTPASKAGTPAAPPPPKKSKLPSWMPSLPSFLRRSPKPPLQPL
HPPEPKSAPSRKPPAAVADPFAAREAERYAEPIASREAILQLLDRCDGPQTLEELAGQLG
LTEPSRMEALSKRLGAMLREAQLVQNRRGGYAPVQQTNLIPGVVIANPDGFGFLRPDEGG
DDLFLPPYEMRKVLHGDRALANVTGIDRRGRREGSIARVLERGLSRLIGRFSMEGGIAYV
VPDDKRIQRNVQIPPDAAGEARDGQLVVCELTSTPDGRRPPIGKIIAVLGDKLTPSLVVE
TAIHGRELPYEFPQAVLDEAAAVPLTVEPAAIKGRVDLRQTPLVTIDGADAKDFDDAVFC
EPNAEGFRLVVAIADVSHYVRPGTPLDVEAIRRATSVYFPGFVVPMLPETLSNGICSLNP
KVDRMCFVCDMQIDRQGEVTGARFYEAVMNSHARLTYEQVWQAVGEKDEQVRKDVATVLP
HIERLYQLYHVLAKARARRGAIEFETSEVRFVLDNTGEVTQAGMLVRNDAHKLIEECMIA
ANVAAARHLLEARIPAPYRVHERPPESKYADLLEFLKEFKLSLPPWNKVVPGDYTKLLKK
VRERPDAALLESVLLRSQSMAVYSPDNAGHFGLALEAYAHFTSPIRRYPDLLVHRAIKYA
LTRGAPDKYLYSPREMAALALQCSERERRADEAEREVDERYRAAWMEKHVGGQFDGVVSG
VTSFGLFVELDQSKVNGLIHVTQLPQDYYQFDAVRKTLSGERRGMQFRLGDRVRILVLKA
SMEERKIDFRLVVEGEPMTDMPPPPERGQQQPAKRKKKKY
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atgaccaatcgaaaagccaagtccggcaagcccggcaagtctgcgtcccacgacacgccc
gccagcaaggccggcaccccggcggctccgccgccgccgaagaaatccaagctgccgtcg
tggatgcccagcctgcccagcttcctgcggcgcagccccaagccgccgctgcaaccgctg
catccgcccgaacccaagtccgcgccgtcgcgcaagccgccggccgcggtcgccgacccg
ttcgccgcccgcgaggccgagcgctatgccgagccgatcgccagccgcgaggcgatcctg
caactgctcgaccgctgcgacggcccgcagaccctggaagagctggccgggcaactcggc
ctgaccgaaccctcgcgcatggaggcgttgagcaagcgcctgggcgcgatgctgcgcgag
gcgcagctggtgcagaaccgccgcggcggctacgcgccggtgcagcagaccaacctgatc
cccggcgtggtgatcgccaatcccgacggcttcggcttcctgcgtccggacgagggcggc
gacgacctgttcctgccgccctacgaaatgcgcaaggtgctgcatggcgaccgcgccctg
gccaacgtcaccggcatcgaccgccgcggccgccgcgaaggcagcatcgcgcgcgtgctc
gagcgcggcctgagccggctgatcggccgcttcagcatggaaggcggcatcgcctacgtg
gtgccggacgacaagcgcatccagcgcaacgtgcagatcccgccggatgcggcgggcgag
gcgcgcgacggccagctggtggtgtgcgaactcacctcgaccccggacgggcggcgcccg
ccgatcggcaagatcatcgcggtgctcggcgacaagctgaccccgtcgctggtggtggag
accgcgatccacggccgcgaactgccctacgaattcccgcaggcggtgctcgacgaagcc
gcggcggtgccgctgacggtggagccggcggcgatcaagggccgcgtggacctgcggcag
acgccgttggtgaccatcgacggcgccgacgccaaggacttcgacgacgcggtgttctgc
gaaccgaacgcggagggcttccgcctggtggtggcgatcgccgacgtgtcgcattacgtg
cgtccgggcacgccgctggacgtggaagcgatccgccgcgccacctcggtgtatttcccc
ggcttcgtggtgccgatgctgccggagacgctgtccaacggcatctgctcgctcaacccc
aaggtcgaccgcatgtgcttcgtctgcgacatgcagatcgaccgccagggcgaggtgacc
ggcgcgcgcttctacgaggcggtgatgaactcgcatgcgcggctcacctacgagcaggtg
tggcaggcggtgggcgagaaggacgaacaggtgcgcaaggacgtggccacggtgctgccg
cacatcgagcgcctgtaccagctgtaccacgtgctggccaaggcgcgtgcgcgccgcggc
gcgatcgagttcgagacctcggaagtgcgcttcgtgctcgacaacaccggcgaggtgacc
caggccggcatgctggtgcgcaacgatgcgcacaagctgatcgaggaatgcatgatcgcc
gccaacgtggccgcggcgcggcacctgctggaggcgcgcatcccggcgccgtaccgcgtg
cacgagcggccgccggagtccaagtacgccgacctgctggagttcctgaaggaattcaag
ttgagcctgccgccgtggaacaaggtggtgccgggcgactacaccaagctgctgaagaag
gtgcgcgagcgccccgacgcggccttgctggagtcggtgctgctgcgcagccagagcatg
gcggtgtactcgccggacaacgccggccacttcggcctggcgctggaggcgtacgcgcac
ttcacctcgccgatccgccgctatccggacctgctggtgcaccgcgcgatcaagtacgcg
ctgacccgcggcgcgccggacaagtacctgtactcgccgcgcgagatggcggcgctggcg
ctgcagtgctccgagcgcgagcgccgtgccgacgaggccgagcgcgaggtcgacgagcgc
taccgcgcggcatggatggagaagcacgtcggcggccagttcgacggcgtggtcagcggc
gtcaccagcttcggcctgttcgtggagctggaccagtccaaggtcaacggcctgatccac
gtgacccagttgccgcaggactattaccagttcgacgcggtgcgcaagaccctgtccggc
gagcgccgcggcatgcagttccggctcggcgaccgggtccgcatcctggtgctgaaggcg
agcatggaagagcgcaagatcgatttccgcctggtggtggaaggcgagccgatgaccgac
atgccgccgccgccggaacgtgggcagcagcagccggccaagcgcaagaaaaagaagtac
tga
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