Xanthomonas bundabergensis: AB3X10_10540
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Entry
AB3X10_10540 CDS
T10887
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
xbn Xanthomonas bundabergensis
Pathway
xbn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xbn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AB3X10_10540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xbn03019
]
AB3X10_10540
03009 Ribosome biogenesis [BR:
xbn03009
]
AB3X10_10540
Enzymes [BR:
xbn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AB3X10_10540
Messenger RNA biogenesis [BR:
xbn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AB3X10_10540
Ribosome biogenesis [BR:
xbn03009
]
Prokaryotic type
rRNA processing factors
AB3X10_10540
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
XEA92965
LinkDB
All DBs
Position
complement(2474094..2477669)
Genome browser
AA seq
1191 aa
AA seq
DB search
MKRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVEY
GGERHGFLPLKEISRDYFQAGVDHNKATIRELLREGQEVVVQVDKEERGNKGAALTTFIS
LAGRYMVLMPNSPSAGGVSRRIEGEDRAALKEALDKLNIPDDMGVIIRTAGVGRDAEELQ
WDLDYLLQVWKSIAEAALAKPAPFLIYQESRLIIRALRDYLRADIGEILVDTVEMYGDAQ
EFMQQVMPQSLRKLKHYTDDIPLFNRFQIESQIEAAYERSVRLPSGGSIVVDQTEALTAV
DVNSSRATKGSDIEDTAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASNKHQREVENR
LQNALKYDRARVQIGRISRFGLLEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESMSLS
IIRVAEEHAMKENTGQVLVQAPVEIANYLLNEKRRALSEIEKRHDAPIVIVADEQLHTPH
YEVTRLRENELGEESAKPSYQRNTPRKLPVHALTKAQLNIPAPAVTNVKHSQPAPVREVV
EAPEPVAAPVQVQAPAPAPVAAPATGVVGWLKRIFGAGESPAPAPAASEPAQRQRAHDGN
RNRNDRGDRNARRDGGNRNGGQGGNAARGNGGNVRRDERRPGNGGGNAQGGQQNLAAKPP
RNEQAPQQAKPQQNPPQQPKAPKQQQPQNPPRQPRPQQEPASAALQGDKPQRQPRQDEVA
AKPVAAAPAAATQDATTIAAAAVAGGAAALSSDAPVSEVNTATPAAAAPQSNVAPASVDE
RESAAETAQAVPAGENGDADDANGEAGGRRRRGRRGGRRRRRGNGEAGSGSEGAAFDDNE
LDAGDSDSDGETAPAPSRNQPEFDFDDDTAPGEAAEAKPQQAPRTPREKREPRPRQEHPA
AAQAPVAAVAAQEAEANADAAPAQSAPVAAAAVATIATAPAVAEPAVAEPVQAEAAPAEV
APAAVAPTAAATPVTAAPLPSASEVPVSRPEAAPAAEAPAAESAPAFVAEPVASDTPPAA
IEAALQPASTPIVERPAPVVAAKPAAEPEAAVAPVAPAEEPATAATVVAEPQQDAAPTPQ
PLAEEEAPSKPAYVPVQTTLLDVFHEEAPAAAVEPTPVHAPVAAAPVSDSAENRHVGDAE
PAPAAAAGNGLFDAPSAAPADAPVSVAQHQPHSRAGDSESDDDKEHKERAS
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgaatgctgatcaacgccacgcaggcggaagagctgcgtgtggccatcgtggac
ggccagaccctgtacgacatcgacatcgagcagccgtccaaggaacagaagaagtccaat
atctacaagggccgcatcacccggctcgaaccctcgctcgaagcggccttcgtcgaatac
ggcggcgagcgccacggcttcctgccgctgaaggaaatctcccgcgattacttccaggcc
ggcgtcgaccacaacaaggcgacgatccgcgagctgctgcgcgagggccaggaagtggtg
gtccaggtggacaaggaagaacgcggcaacaagggcgccgcgctgaccacgttcatctcg
ctggccggccgctacatggtgctgatgccgaactcgcccagcgccggcggcgtctcgcgc
cggatcgagggcgaggaccgcgccgcgctgaaggaagcgctggacaagctgaacatcccc
gacgacatgggcgtgatcatccgcaccgccggcgtcggccgcgacgccgaagagctgcag
tgggacctggactacctgctgcaggtgtggaagtcgatcgccgaggccgcgctggccaag
ccggcgccgttcctgatctaccaggaatcgcggctgatcatccgcgccctgcgcgactac
ctgcgcgccgacatcggcgagatcctggtcgataccgtcgagatgtacggcgatgcccag
gagttcatgcagcaggtgatgccgcagagcctgcgcaagctcaagcactacaccgacgac
atcccgctgttcaaccgcttccagatcgaatcgcagatcgaggcggcctacgagcgcagc
gtgcgcctgccgtccggcggctcgatcgtggtcgaccagaccgaggcgctgaccgcggtg
gacgtcaactcctcgcgcgcgaccaagggcagcgacatcgaggacaccgcgttccagacc
aacctggaggcggccgaagaggtcgcgcgccagctgcgcctgcgcgacctcggcggcctg
gtggtcatcgacttcatcgacatggcctccaacaagcaccagcgcgaagtcgagaaccgc
ctgcagaacgcgctcaagtacgaccgcgcgcgggtgcagatcggccgcatctcgcgcttc
ggcctgctcgagatgagccgccagcgcctgcgtccgtcgctgggcgagtccagccagatc
gtatgcccgcgctgcgacggccatggccgcatgcgcagcgtcgagtcgatgtcgctgtcg
atcatccgcgtcgccgaagagcacgcgatgaaggagaacaccggacaggtgctggtgcag
gccccggtggagatcgccaactacctgctcaacgagaagcgccgcgcgctcagcgagatc
gagaagcgccacgacgcgccgatcgtcatcgtcgccgacgagcagttgcacaccccgcac
tacgaagtgacccgcctgcgcgagaacgagctcggcgaggaaagcgccaagcccagctac
cagcgcaacaccccgcgcaagctgccggtgcatgcgctgaccaaggcgcagctgaacatt
ccggcgcccgcggtgaccaatgtgaagcactcgcagccggccccggtgcgcgaagtggtc
gaggcgcccgaaccggtcgccgcgcccgtgcaggtccaggccccggcgcccgctccggtc
gcggctccggccaccggcgtggtcggctggctgaagcggatcttcggtgccggcgaaagc
ccggcgccggcgccggccgcgagcgagccggcgcagcgccagcgcgcccacgacggcaac
cgcaaccgcaacgaccgcggcgaccgcaacgcgcgtcgcgatggcggcaaccgcaacggc
ggccagggcggcaatgccgcgcgcggcaacggcggcaacgtgcgtcgcgacgagcggcgt
ccgggcaacggcggcggcaatgcgcaaggcggccagcagaacctggcggccaagccgccg
cgcaacgaacaggcgccgcagcaggccaagccgcagcagaacccgccgcagcagccgaag
gcgccgaagcaacagcagccgcagaacccgccgcggcagccccggccgcagcaggagccg
gcatcggccgcgctgcagggcgacaagccgcagcgccagccgcgccaggacgaggtcgcg
gccaagcccgtcgccgccgctcccgccgctgcaacgcaggacgccaccacgatcgcggcc
gccgccgtggccggtggtgccgccgcgctgagcagcgacgcaccggtcagcgaggtcaac
accgccacgccggcagcggccgcgccgcagtcgaacgtggcaccggcgagcgtcgatgaa
cgcgagagtgccgcggaaaccgcgcaggcggtcccggccggcgagaacggcgacgccgac
gacgccaatggcgaggccggtggccgccgccgtcgtggccgtcgtggcggccgccgccgc
cgtcgcggcaatggcgaagccggcagcggcagcgagggcgcggcgttcgacgacaacgaa
ctggatgccggcgacagcgacagcgacggcgaaaccgcgccggcgccgagccgcaaccag
ccggagttcgacttcgacgacgacaccgcccccggcgaagccgccgaggccaagccgcag
caggcgccgcgtacaccgcgggaaaagcgcgagccgcggccgcgacaggagcatcctgcc
gcggcgcaggcgccggtcgctgccgttgcagcgcaggaagccgaggcaaacgccgacgct
gccccggcgcagtccgcgccggtcgccgcagccgcggtggcgacgatcgcaacggctccc
gccgttgccgaaccggcagttgccgagccggtacaggccgaggctgcaccggcggaagtg
gcacctgcggcagtggcacccacggcggcagcgacgccggtgacggcggcgccattgcct
tccgccagcgaagtgccggtctcgcgtcccgaagcggcgcctgcagcggaagcgcctgca
gcggaatctgcgccggcgttcgtcgccgaaccggtcgcgtccgacacgccgccggcggcg
atcgaagcggcgctgcagccggcgtcgacgccgatcgtcgaacggcccgccccggtcgtt
gcggcgaagcccgctgcggaaccggaagccgccgtggcaccggtcgcgccagccgaggaa
ccggcaacggcagccacggtggtcgccgagccgcagcaggacgccgcgccgacgccgcaa
ccgctcgccgaggaagaagcgcccagcaagccggcctacgtgccggtgcagaccacgctg
ctggacgtgttccatgaggaagcgccggccgcggcggtcgaaccgacgccggtacacgcg
ccggtcgctgctgctccggtgtcggacagcgccgaaaaccgccacgtcggcgatgccgaa
ccggcacctgccgctgcggctggcaacggcctgttcgatgcgccgtctgccgctccggcg
gacgcgccggtcagcgtcgcccagcaccagccgcacagcagggccggcgacagcgaaagc
gacgacgacaaggagcacaaggaacgcgccagctga
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