Xanthomonas bundabergensis: AB3X10_12320
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Entry
AB3X10_12320 CDS
T10887
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
xbn Xanthomonas bundabergensis
Pathway
xbn03410
Base excision repair
xbn03430
Mismatch repair
xbn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xbn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AB3X10_12320 (recJ)
03430 Mismatch repair
AB3X10_12320 (recJ)
03440 Homologous recombination
AB3X10_12320 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xbn03400
]
AB3X10_12320 (recJ)
DNA repair and recombination proteins [BR:
xbn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
AB3X10_12320 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
AB3X10_12320 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AB3X10_12320 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
XEA88988
LinkDB
All DBs
Position
complement(2931122..2932849)
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AA seq
575 aa
AA seq
DB search
MSPALRITRRPAAEGGPWTDSMLPLLRRIYTARGAHDPGLAQPKLAQLLPPDALSGIDAA
VALLAAAIGAGKRILVVGDFDCDGATACAVAVRGLRLLGAAQVLHAVPNRMVHGYGLSPA
LVAELAPLQPDLLVTVDHGIACHAGVAAAKALGWQVLVTDHHLPGSVLPPADAIVDPNLA
GDAFPSKMLAGVGVIFYVLLALRRHLRERGAFAAQAPDLTVLLDLVAVGTVADLVPLDAN
NRALVAAGLRRLQRGDGCVGLRALIEASGRDPARLSAGDIGFALAPRLNAAGRLEDMALG
IELLLCEDPRQAREIAATLEQINGERRAVQQQMTDEAEATVARALLAAPDAPPVAVCLFD
ADWHPGVIGLVASKLKDRLHRPVIAFAPAEPGSAQLRGSARSIPGFHIRDAMAAVEARRP
GLMDKFGGHAMAAGLSLRQDALAEFEQLFREHALASLDAELLQAELLSDGALDPHELDHR
HAEALRLAGPWGQGFPEPLFDGEFEVLQWRVLKERHLKLSLRCAGRGDALNAIHFNGWHG
SEPGRRVHIAYRLVADDYRGGEAVQLVVEHCQSLA
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atgagcccggcgctgcgcatcacccggcggccggccgccgagggcgggccgtggacggac
agcatgctgccgctgctgcgccgcatctacaccgcgcgcggcgcccacgaccccggcctg
gcgcagccgaaactggcgcagctgctgccgccggatgcgctcagcggcatcgacgcggcg
gtcgccttgctggccgcggcgatcggcgccggcaagcgcatcctggtggtcggcgatttc
gactgcgacggcgccaccgcctgcgcggtcgcggtgcgcgggctgcgcctgctcggcgcc
gcgcaagtgctgcacgcggtgcccaaccgcatggtgcacggctacggcctgtcgccggcg
ctggtcgccgaactggcgccgctgcaaccggacctgctggtcaccgtcgaccacggcatc
gcctgccatgccggcgtggccgcggccaaggcgctgggctggcaggtgctggtcaccgac
caccacctgccgggcagcgtgctgccgccggccgatgcgatcgtcgatccgaacctggcc
ggcgacgcgttcccgagcaagatgctggccggcgtcggggtgatcttctatgtgctgctg
gcgctgcgccggcacctgcgcgagcgcggcgcgttcgcggcgcaggcgccggacctgacg
gtgctgctggacctggtcgcggtcggcaccgtcgccgacctggtgccgctggacgccaac
aaccgcgcgctggtggcggccgggctgcgccgcctgcagcgcggcgacggctgcgtcggc
ctgcgcgccttgatcgaggccagcggccgcgacccggcccggctcagcgccggcgacatc
ggcttcgcgctggcgccgcggctcaacgccgccgggcgcctggaggacatggcgctgggc
atcgagctgctgctgtgcgaagacccgcggcaggcgcgcgagatcgccgccacgctggaa
cagatcaacggcgagcgccgcgccgtgcagcagcagatgaccgacgaggccgaggccacc
gtggcgcgggccttgctggccgcgccggacgcgccgccggtggcggtgtgcctgttcgat
gccgactggcatccgggcgtgatcggcctggtcgcctcgaagctgaaggaccggctgcat
cgcccggtgatcgccttcgccccggccgagcccggcagcgcgcagttgcgcggttcggca
cgctcgattcccggcttccatatccgcgacgcgatggcggcggtggaggcgcgccggccc
gggctgatggacaagttcggcggccatgcgatggcggcggggctgagcctgcgccaggac
gccctggccgagttcgagcaactgttccgcgaacatgcgctggccagcctggacgcggaa
ttgctgcaggccgaactgctcagcgacggcgcgctggatccgcacgagctggaccaccgc
catgccgaggcgctgcgcctggccgggccatgggggcagggcttccccgaaccgctgttc
gacggcgagttcgaggtgctgcagtggcgcgtgctgaaggagcgccacctcaagctgagc
ctgcgttgcgccggccgcggcgacgcgttgaacgcgatccacttcaacggctggcacggc
agcgaacccggccgccgcgtgcacatcgcctaccgcctggtcgccgacgactaccgcggc
ggcgaggcggtgcaactggtggtggagcactgccagagcctggcttag
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