Xanthomonas bundabergensis: AB3X10_17730
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Entry
AB3X10_17730 CDS
T10887
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
xbn Xanthomonas bundabergensis
Pathway
xbn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xbn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AB3X10_17730 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xbn03021
]
AB3X10_17730 (rpoB)
03400 DNA repair and recombination proteins [BR:
xbn03400
]
AB3X10_17730 (rpoB)
Enzymes [BR:
xbn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AB3X10_17730 (rpoB)
Transcription machinery [BR:
xbn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AB3X10_17730 (rpoB)
DNA repair and recombination proteins [BR:
xbn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AB3X10_17730 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
XEA89989
UniProt:
A0ACH2M291
LinkDB
All DBs
Position
complement(4186275..4190426)
Genome browser
AA seq
1383 aa
AA seq
DB search
MTSYSFTEKKRIRKDFGKQRSILEVPFLLAIQVDSYREFLQENTDPNKRSDHGLHAALKS
VFPISSYSGNAALEYVGYKLGDPVFDERECRQRGMSYGAPLRVTVRLVIYDRESSTKAIK
YVKEQEVYLGEIPLMTDNGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSAR
IIPYRGSWLDFEFDPKDALFTRIDRRRKLPVSILLRALGYSNEEMLAEFFEINTFHIDPK
EGVQLELVPERLRGETLNFDLADGDKVIVEAGKRITARHVKQLEAAGVAALAVPDEYLVG
RILSHDVVDASTGELLASANDEISEDQLTAFRKAGVDAVGTLWVNDLDRGPYLSNTLRID
PTKTQLEALVEIYRMMRPGEPPTKDAAQNLFHNLFFTFERYDLSTVGRMKFNRRVGRKEV
TGESVLYDKKYFGERNDEESKRLVAEHADSSDILEVIKVLTEIRNGRGVVDDIDHLGNRR
VRSVGEMAENVFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQLS
QFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNIGLI
NSLAVYARTNQYGFLETPYRKVVDGQITDDVEYLSAIEENEYVIAQANALHDSKSRLTEQ
FVPCRYQGESLLKPPAEVHFMDVSPMQTVSIAAALVPFLEHDDANRALMGANMQRQAVPT
LRAQKPLVGTGIERAVARDSGVTVNAKRGGVIEQIDAARIVVKVNEEEIGGGTDAGVDIY
NLIKYTRSNQNTCINQRPLVNVGDVIARGDVLADGPSTDIGELALGQNMLIAFMPWNGYN
FEDSILLSERVVEEDRYTTIHIEELTCVARDTKLGPEEISADIPNVSEQALNRLDESGVV
YIGAEVRAGDIMVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVIDV
QVFTRDGIEKDKRARQIEENEIKRVKKDFDDQFRILESAIYARLRAQLIGKVANGGPNLK
KGDTITDAYLDGLKKSDWFALRMKDEEPSDAIERAQKQIQAHEKEFERRFADKRGKITAG
DDLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSMIQPIEDMPYMANGETVDIVLN
PLGVPSRMNIGQVLEVHLGWAAKGLGRKIQNMLEAQAKVADLRKFLTQIYNHDQKLGEDR
VDLDQFSDAELLALSKNLTDGVPMATPVFDGATEAEIKHMLELADLPISGQTQLYDGRTG
EAFDRHTTVGYMHMLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWAL
EAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGEHEMVAGMPESFNVLVKEIRSLAINME
LED
NT seq
4152 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcttattcgttcaccgaaaagaagcgtatccgcaaggatttcggcaagcagcgc
tcgatcctcgaagtgccgttcctgctggcgatccaggtggattcctaccgcgagttcctg
caggagaacaccgacccgaacaagcgttcggaccacggcctgcacgcggccctgaaatcg
gtgttcccgatctccagctacagcggcaacgcggccctggagtacgtcggctacaagctg
ggcgacccggtgttcgacgagcgcgagtgccgccagcgcggcatgagctacggcgccccg
ctgcgggtgaccgtgcgcctggtgatctacgaccgcgagtcgtcgaccaaggccatcaag
tacgtgaaggagcaggaggtctacctcggcgagatcccgctgatgaccgacaacggcacc
ttcatcgtcaacggtaccgagcgcgtcatcgtctcgcagctgcaccgctcgccgggcgtg
ttcttcgaccacgaccgcggcaagacccacagctcgggcaagctgctgtacagcgcccgc
atcatcccgtaccgcggttcctggctggacttcgagttcgacccgaaggacgcgctgttc
acccgtatcgaccgccgccgcaagctgccggtgtcgatcctgctgcgcgcgctcggctat
tcgaacgaagagatgctggccgagttcttcgagatcaacaccttccacatcgaccccaag
gaaggcgtgcagctggagctggtgcccgagcgcctgcgcggcgagacgctgaacttcgac
ctggccgatggtgacaaggtcatcgtcgaggccggcaagcgcatcaccgcgcgccacgtc
aagcagctggaagccgccggcgtcgccgcgctggccgtgcccgacgaatacctggtcggc
cgcatcctgtcgcacgacgtggtcgatgcctccaccggcgaactgctggccagcgccaac
gacgagatcagcgaagaccagctgaccgcgttccgcaaggccggcgtcgatgccgtgggc
acgctgtgggtcaacgacctggaccgcggcccgtacctgtccaacaccctgcgcatcgat
ccgaccaagacccagctggaagcgctggtcgagatctaccgcatgatgcgtcccggcgag
ccgccgaccaaggatgccgcgcagaacctgttccacaacctgttcttcaccttcgagcgc
tacgacctgtccacggtcggccgcatgaagttcaaccgccgtgtcggccgcaaggaagtc
accggcgagtcggtgctgtacgacaagaagtacttcggcgagcgcaacgacgaagagtcc
aagcgcctggtcgccgagcatgccgacagctccgacatcctggaagtgatcaaggtcctg
accgagatccgcaacggccgcggcgtggtcgacgacatcgaccacctgggcaaccgtcgc
gtgcgctcggtcggcgaaatggccgagaacgtgttccgcgtgggcctggtccgcgtcgag
cgtgcggtcaaggagcgcctgtcgatggccgagtccgaaggcctgaccccgcaggagctg
atcaacgccaagccggtggccgccgcgatcaaggagttcttcggctcctcgcagctgtcg
cagttcatggaccagaacaacccgctgtcggaagtgacgcacaagcgccgcgtctccgcg
ctgggcccgggcggcctgacccgcgagcgcgccggcttcgaagtgcgcgacgtgcatccc
acccactacggccgcgtctgcaccatcgagacgccggaaggcccgaacatcggcctgatc
aactcgctggcggtgtacgcccgcaccaaccagtacggcttcctggagacgccgtaccgg
aaggtcgtggacggccagatcaccgacgacgtcgaatacctgtcggcgatcgaagagaac
gagtacgtgatcgcgcaggccaacgcgctgcacgattccaagagccgcctgaccgagcag
ttcgtgccgtgccgctaccagggcgagtcgctgctgaagccgccggccgaagtgcacttc
atggacgtgtcgccgatgcagaccgtgtccatcgcggcggcgctggtgccgttcctggag
cacgacgacgccaaccgcgcgctgatgggcgcgaacatgcagcgccaggccgtgccgacg
ctgcgcgcgcagaagccgctggtcggtaccggcatcgagcgcgccgtggcgcgcgactcg
ggcgtgaccgtgaacgccaagcgcggcggcgtgatcgagcagatcgacgcggcgcgcatc
gtggtcaaggtcaacgaggaagagatcggcggcggcaccgatgccggcgtggacatctac
aacctgatcaagtacacgcgctccaaccagaacacctgcatcaaccagcgtccgctggtc
aatgtgggcgacgtgatcgcgcgcggcgacgtgctggccgacggtccctcgaccgacatc
ggcgagctggccctgggccagaacatgctgatcgcgttcatgccgtggaacggctacaac
ttcgaagactccatcctgctctccgagcgcgtggtggaagaggatcgctacaccacgatc
cacatcgaagagctgacctgcgtggcgcgcgacaccaagctggggccggaggaaatctcc
gccgacatcccgaacgtgtccgagcaggcgctgaaccgcctggacgagtcgggcgtggtg
tacatcggcgccgaagtgcgcgccggcgacatcatggtcggcaaggtcacgccgaagggc
gagagccagctgaccccggaagagaagctgctgcgcgcgatcttcggcgagaaggcctcg
gacgtgaaggacagctcgctgcgcgtgccgccgggcatggacggcaccgtcatcgacgtg
caggtgttcacccgcgacggcatcgagaaggacaagcgcgcccgccagatcgaggaaaac
gagattaagcgggtcaagaaggacttcgacgaccagttccgcatcctggaaagcgcgatc
tacgcgcgcctgcgcgcccagttgatcggcaaggtcgccaacggcggtccgaacctgaag
aagggcgacaccatcaccgacgcgtacctggacgggctgaagaagtccgactggttcgcg
ctgcggatgaaggacgaggagccgtcggacgcgatcgagcgcgcgcagaagcagatccag
gcgcacgagaaggaattcgagcgtcgcttcgccgacaagcgcggcaagatcaccgccggc
gacgacctcgccccgggcgtgctgaagatggtcaaggtgttcctggcggtgaagcgccgc
atccagcccggcgacaagatggccggtcgccacggcaacaagggtgtcgtgtcgatgatc
cagccgattgaggacatgccgtacatggccaacggcgagaccgtggacatcgtgctgaac
ccgctgggcgtgccgtcgcgcatgaacatcggccaggtgctggaagtgcatctgggctgg
gccgccaagggcctgggtcgcaagatccagaacatgctcgaggcccaggcaaaggtcgcc
gacctgcgcaagttcctgacccagatctacaaccacgaccagaagctgggcgaggaccgc
gtggacctggatcagttcagcgacgccgagctgctggcgctgtcgaagaacctgaccgac
ggcgtgccgatggccaccccggtgttcgacggtgcgacggaagcggagatcaagcacatg
ctcgagctcgccgacctgccgatcagcggccagacccagctgtacgacggccgcaccggc
gaggcgttcgaccgccacaccacggtcggctacatgcacatgctgaagctgaaccacctg
gtcgacgacaagatgcacgcgcgctccaccggtccgtactcgctcgtcacccagcagccg
ctgggcggcaaggcgcagttcggcggccagcgcttcggcgaaatggaagtctgggcgctg
gaagcctacggcgcggcctacaccctgcaggaaatgctgacggtgaagtccgacgacgtg
cagggccgcaaccagatgtacaagaacatcgtcgacggcgagcacgagatggtcgcgggc
atgccggaatccttcaacgtcctggtgaaggaaatccgctcgctggccatcaacatggaa
ctggaagactga
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integrated database retrieval system
