Xanthomonas bundabergensis: AB3X10_18970
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Entry
AB3X10_18970 CDS
T10887
Name
(GenBank) polysaccharide lyase family 1 protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
xbn Xanthomonas bundabergensis
Pathway
xbn00040
Pentose and glucuronate interconversions
xbn01100
Metabolic pathways
xbn02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
xbn00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
AB3X10_18970
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
AB3X10_18970
Enzymes [BR:
xbn01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
AB3X10_18970
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-ProteinID:
XEA90218
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Position
complement(4478304..4479455)
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AA seq
383 aa
AA seq
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MKTQSLIASPRTLTHAIALAVCLAGATGSAYADASLEVASTGWATQNGGTKGGSKAAAAN
VYSVSTAAQLKTALKASVGSNGRIIKISGIIDVSEGTPYSTTADMKSRARLDIPTKTTLI
GVGSNAQIREGYLYVKANDVIIRNLTIENPWDPQPVWDPDDGSAGNWNSEYDGLTIEGAS
NVWVDHVTFTDGRRTDDQNGTANGRPKQHHDGALDVKKGANYVTISYSAFKSHEKNNLIG
SSDSASSTDSGKLKVTIHNTLFENISARAPRVRFGQVHLYNNYHVGSTSHAVYPFSHAHG
VGKESKIFSENNAFDIAGVSSCDKIAADYGGSVYRDFGSLLNGKALTCSWNNSIGWTPPY
TYSLLPANQVASDVKAKAGAGKL
NT seq
1152 nt
NT seq
+upstream
nt +downstream
nt
atgaagacacagtcactcatcgcatccccgcgcacgctcacccatgcgattgcgcttgca
gtctgtctggcgggcgcgaccggcagcgcctacgccgatgccagcctggaggtcgccagc
accgggtgggcgacgcagaacggcggcaccaagggcggttccaaggccgccgcggccaac
gtctacagcgtcagcaccgccgcgcagctgaagaccgcgctgaaggccagcgtcggcagc
aacggccgcatcatcaagatcagcggcatcatcgacgtcagcgagggtacgccgtacagc
accaccgcggacatgaagagccgtgcgcgcctggacatccccaccaagaccacgctgatc
ggcgtcggttccaatgcgcagatccgcgagggctatctgtacgtcaaggccaacgacgtg
atcatccgcaacctcaccatcgaaaatccgtgggatccgcagccggtgtgggatccggac
gacggcagcgccggcaactggaattccgagtacgacgggctgaccatcgaaggcgccagc
aacgtgtgggtggaccatgtcaccttcaccgacgggcgccgcaccgacgaccagaacggc
accgccaacggccgccccaagcagcatcacgacggcgcgctggacgtgaagaagggcgcc
aactacgtgaccatctcgtattcggcgttcaagtcgcacgagaagaacaacctgatcggt
tccagcgacagcgcctccagcaccgacagcggcaagttgaaggtgaccatccacaacacg
ctgttcgagaacatctccgcgcgcgcgccgcgggtgcgcttcggccaggtgcacctgtac
aacaattaccacgtgggcagcaccagccacgcggtgtatccgttctcgcacgcacacggc
gtcggcaaggagtcgaagatcttctccgagaacaacgccttcgacatcgccggcgtcagc
agctgcgacaagatcgccgccgactacggcggcagcgtgtaccgcgatttcggctcgctg
ctcaacggcaaggcgctgacctgctcgtggaacaacagcatcggctggaccccgccgtac
acctattcgctactgccggcgaaccaggtggcgagcgacgtcaaggccaaggccggcgcg
ggcaagctctga
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