Xanthomonas bundabergensis: AB3X10_19210
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Entry
AB3X10_19210 CDS
T10887
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
xbn Xanthomonas bundabergensis
Pathway
xbn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xbn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AB3X10_19210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xbn03019
]
AB3X10_19210
Enzymes [BR:
xbn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AB3X10_19210
Messenger RNA biogenesis [BR:
xbn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AB3X10_19210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
XEA90264
LinkDB
All DBs
Position
4533389..4534747
Genome browser
AA seq
452 aa
AA seq
DB search
MSFESLGLAPFLLRALAEQGYETPTPIQLQAIPLALAGHDLMAGAQTGTGKTAAFGLPLL
QHLGTTPQPVGPGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSTTIYGGVGMGNQL
DALRRGVDLLIACPGRLLDHLERRSVDLSGIEILVLDEADRMLDMGFLPSIKRILAKLPK
QNRQTLLFSATFEEGIKQLAREFMHDPQEIQATPSNTVADTITHRVHPVDGTRKRELLLH
LLAADSRMQTLVFARTKHGADKLTMFLDKSGLKTAAIHGNKSQGQRLRALSDFKAGRITV
LVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSQGEAVSLVAQDEAKLLR
AIARMLKRDMDIRDVPGFEPVTPIRWGNNNPADERPGGQRPPRKSTHARRPHGDAPRPHA
HAGTKPAGAQPNGGRGQGRRQANGGNRQPGAR
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttcgaatccctgggcctggcgcccttcctgctgcgtgcgttggccgagcagggc
tacgaaacccccaccccgatccagttgcaggcgatcccgctggcgctggccggccacgac
ctgatggccggcgcgcagaccggcaccggcaagaccgccgcgttcggcctgccgctgctg
caacacttgggcaccacgccgcagccggtcggccccggtccgcgcaagccgcgcgcgctg
atcctgaccccgacccgcgagctggccacccaggtgcatgacagcctgcgcggctacagc
aagtacctgcgcatccccagcaccaccatctacggcggcgtcggcatgggcaaccagctc
gacgcgctgcgccgcggcgtggacctgctgatcgcctgcccgggccgcctgctcgatcac
ctcgagcgccgcagcgtggacctgtcgggcatcgagatcctggtgctggacgaggccgac
cgcatgctcgacatgggcttcctgccctcgatcaagcgcatcctggccaagctgcccaag
cagaaccggcagaccctgctgttctcggccaccttcgaggaaggcatcaagcagctggcc
cgcgagttcatgcacgacccgcaggaaatccaggccacgccgagcaacaccgtcgccgac
accatcacccaccgcgtgcacccggtcgatggcacccgcaagcgcgagctgctgctgcac
ctgctggccgccgattcgcgcatgcagaccctggtgttcgcgcgcaccaagcacggcgcc
gacaagctgaccatgttcctggacaagtccgggctgaagaccgcggcgatccacggcaac
aagagccagggccagcgcctgcgcgcgctgagcgacttcaaggccggccgcatcacggtg
ctggtggcgaccgacatcgccgcgcgcggcatcgacatcgaccagctgccgaaggtcatc
aactacgacctgccgatggtcgccgaggactacgtgcaccgcatcggccgcaccggccgc
aacggctcgcagggcgaggcggtgtcgctggtggcgcaggacgaggccaagctgctgcgt
gcgatcgcgcgcatgctcaagcgcgacatggacatccgcgacgtgccgggcttcgagccg
gtcacgccgatccgctggggcaacaacaacccggccgacgagcgtccgggcggccagcgt
ccgccgcgcaagagcacccatgcgcgccgcccgcacggcgatgcgccgcgtccgcacgcg
catgccggcaccaagccggccggcgcccagcccaacggcgggcgtggccagggccgccgc
caggccaacggcggcaatcgccagcccggcgcgcgctga
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