Xenorhabdus bovienii SS-2004: XBJ1_0370
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Entry
XBJ1_0370 CDS
T01186
Symbol
truB
Name
(GenBank) tRNA pseudouridine 5S synthase
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
xbo
Xenorhabdus bovienii SS-2004
Brite
KEGG Orthology (KO) [BR:
xbo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xbo03016
]
XBJ1_0370 (truB)
Enzymes [BR:
xbo01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
XBJ1_0370 (truB)
Transfer RNA biogenesis [BR:
xbo03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
XBJ1_0370 (truB)
Prokaryotic type
XBJ1_0370 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
PUA_3
Motif
Other DBs
NCBI-ProteinID:
CBJ79520
UniProt:
D3UYZ2
LinkDB
All DBs
Position
377928..378875
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AA seq
315 aa
AA seq
DB search
MGRRRRGRAIHGVLLLDKPQDISSNDALQKVRRIFDASKAGHTGALDPLATGMLPICLGE
ATKFSQFLLDSDKRYRVIARLGQRTDTSDSHGKVICEREVQITQPQLAAALDTFRGDTMQ
VPSMYSALKHQGKPLYEYARQGIAIEREARPITVYELQFIRWEGDELELEIHCSKGTYIR
TIIDDLGELLGCGAHVIYLHRLQVANYPTHRMVTLEQLHELKKQAEEQEVDAGELLDPLL
LPMDTAVAHFPVIQLASVVAAYLKQGQPVRSKHSLTSGEWVRVTEGDENKFIGIAVIDDG
GLVAPRRLVVEIEQL
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atggggcgtcgtcgtaggggccgtgcgatacacggcgtattgctgctggataagccgcag
gatatttcctctaatgatgcgttacagaaagtaaggcggatcttcgatgccagcaaagcg
ggtcatacgggtgcgctagatccactggctaccggaatgctgccaatttgccttggtgaa
gcgaccaaattttcccagttcctgctggattctgacaaacgctatcgggtaattgcccgt
ttgggacagcgcacagacacttcggattcacatggaaaagtcatttgtgaacgtgaagtg
cagattacccagccccagcttgcagccgcattggatacattccgtggtgataccatgcag
gttccttccatgtattctgcgctgaaacatcagggaaaaccgctgtatgaatatgcccgt
cagggaattgcaattgagcgggaagcgcgtccgattactgtttacgaattgcagttcatt
cgctgggaaggtgatgagctagagctggaaatacactgttccaagggaacgtatatccgt
actatcattgatgatttaggcgaactattgggctgtggtgcgcatgtaatttatctgcac
cgtttgcaggttgccaattatcctactcatagaatggtgacactggaacagttgcatgaa
ttaaaaaaacaggctgaagaacaagaagttgatgcgggagaattgctcgatccattgtta
ctgccaatggatacagcggtcgcacattttccagtcattcagttggcatcagttgttgct
gcttatcttaagcaggggcagccagttcgcagtaaacacagtttaacatccggtgaatgg
gtgagagtcactgaaggggatgaaaacaaattcatcggcatcgcggtgattgatgatggt
ggcttggtggctccgcgtcgtctggtggtagaaatagaacaattataa
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