Xenorhabdus bovienii SS-2004: XBJ1_0374
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Entry
XBJ1_0374 CDS
T01186
Symbol
deaD
Name
(GenBank) cold-shock DeaD box ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
xbo
Xenorhabdus bovienii SS-2004
Pathway
xbo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xbo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XBJ1_0374 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xbo03019
]
XBJ1_0374 (deaD)
03009 Ribosome biogenesis [BR:
xbo03009
]
XBJ1_0374 (deaD)
Enzymes [BR:
xbo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
XBJ1_0374 (deaD)
Messenger RNA biogenesis [BR:
xbo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XBJ1_0374 (deaD)
Ribosome biogenesis [BR:
xbo03009
]
Prokaryotic type
rRNA helicases
XBJ1_0374 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
UvrD-helicase
AAA_22
DRTGG
Motif
Other DBs
NCBI-ProteinID:
CBJ79524
UniProt:
D3UYZ6
LinkDB
All DBs
Position
382916..384904
Genome browser
AA seq
662 aa
AA seq
DB search
MTTETEISFADLGLSAPILAALGDMGYEKPSPIQQQCIPHLLNGRDVLGMAQTGSGKTAA
FSLPLLHNIDAELKAPQILVLAPTRELAVQVAEACSEFSKQMRSVNVVALYGGQRYDVQL
RALRQGPQVVVGTPGRLLDHLKRGTLDLSNLKGLVLDEADEMLRMGFIEDVENIMSQIPA
EHQTALFSATMPEAIRRITRRFMNDPQEVRIQSSVTTRPDISQSYWSVHGVRKNEALVRF
LETEDFDATIIFVRTKNATLEVAETLERHGYNSAALNGDMNQALREQTLERLKDGRLDIL
IATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRN
VERTMKLTIPEVELPNAELLSQRRLEKFAAKVQQQLESSDLDQYRALLSKLSTNDELDME
TLAASLLKMAQGERPLILPPDPVRRPRREFNDRDDRRRDGFSSRERNDRGDRNDRGDRAD
RGDKGDRPRRERRDVGDMELYRIEIGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFATH
STIELPKGMPGDLLSHFTRTRILNKPLNMQLMGDAQPFERRERRGGGSGRTGNGSNASNG
GNGSTGGNGSNGGNAPRRDREGFGNGGRRFSTERRGDRVNSRGRSGDESNSAPRRRQNSG
NA
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgaccactgagactgaaatctcttttgctgatttaggtttatcagcacctattcttgct
gcattgggagacatgggctatgagaagccttcccctattcaacaacaatgtattcctcac
ctgttaaacggtcgtgatgtgctgggtatggcacagaccggtagtggtaaaactgcagca
tttagcttgcctttgctgcacaatattgatgctgagcttaaagctccacagatccttgtg
ttagcgccaacccgtgaactggcggtacaggttgctgaagcatgttcagagttttccaag
caaatgcgtagcgtaaatgttgttgcactctacggtggacagcgttacgacgtgcaattg
cgtgcactgcgtcaagggccacaggttgtggtaggcacgccgggtcgtctgttggatcac
ctgaaacgtggtactttggatctgtccaacctgaaaggtctggtactggatgaagccgac
gaaatgctgcgcatgggctttatcgaagatgttgagaacatcatgagccagatccctgct
gagcaccagactgcattgttctcagcaactatgcctgaagcgattcgtcgtattactcgt
cgtttcatgaatgatccacaggaagttcgtattcagagcagtgtgacgactcgtccagat
atcagccaaagctactggtctgtacatggcgtgcgtaaaaacgaagcgctggtacgtttc
cttgaaacagaagattttgacgctacgattattttcgtgcgtaccaaaaatgcaacgctg
gaagtagcagaaaccctggaacgtcatggttataactctgcggcattgaatggtgacatg
aatcaggcgctgcgtgagcagacactggaacgtttgaaagacggccgtttggatatcctg
attgcgacagatgtagcggctcgtggtctggatgttgagcgcatcagtctggtcgtgaac
tacgatatcccaatggatgcggaatcatatgtacaccgtatcggccgtactggtcgtgct
ggtcgtgctggccgtgctctgctgtttgttgaaaaccgcgagcgtcgtctgctgcgtaac
gttgaacgtaccatgaaactgaccatcccagaagttgaactgccgaatgcagaacttctg
agccagcgtcgtctggagaaatttgcggctaaggttcagcagcaactggaaagcagcgat
ctggatcaatatcgtgccctgttgtctaaactgagcactaacgatgagctggatatggaa
acgctggcagcgtcattgctgaaaatggcacagggtgagcgcccactgattctgccacca
gacccagttcgtcgtcctcgtcgtgaattcaatgatcgtgatgaccgtcgccgtgatggt
ttcagcagtcgtgaaagaaatgacagaggtgacagaaacgaccgtggcgacagagctgac
cgtggcgacaaaggtgatcgtccgcgccgcgaacgccgtgatgtgggagacatggaactg
taccgcattgaaataggtcgtgatgatggtgttgaagtgcgtcacattgttggtgcaatc
gccaacgaaggtgatatcagcagccgttatatcggtaatatcaagctgttcgctactcac
tccaccattgagctgccaaaaggaatgccgggggatttgctgtctcacttcacacgtacc
cgcatcctgaacaagccactgaatatgcagttgatgggtgatgcacaaccgtttgaacgt
cgcgaacgtcgtggcggtggtagtggtcgcactggtaacggtagcaacgctagcaatggc
ggtaatggtagcactggcggtaacggtagcaacggtggtaatgcaccacgtcgtgatcgt
gagggttttggtaatggtggtcgtcgttttagcactgaacgccgtggcgatcgtgttaat
tcccgtggccgcagtggtgatgagagcaatagcgcaccacgtcgtcgtcaaaacagcggc
aacgcataa
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