Xenorhabdus bovienii SS-2004: XBJ1_0414
Help
Entry
XBJ1_0414 CDS
T01186
Symbol
rtcR
Name
(GenBank) sigma N (sigma 54)-dependent transcriptional activator of RNA 3'-terminal phosphate cyclase (EBP familiy)
KO
K14414
transcriptional regulatory protein RtcR
Organism
xbo
Xenorhabdus bovienii SS-2004
Brite
KEGG Orthology (KO) [BR:
xbo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xbo03000
]
XBJ1_0414 (rtcR)
Transcription factors [BR:
xbo03000
]
Prokaryotic type
Other transcription factors
Others
XBJ1_0414 (rtcR)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcR
Sigma54_activat
Sigma54_activ_2
AAA_5
AAA_16
AAA
Mg_chelatase
AAA_22
NACHT
MCM
ABC_tran
AAA_14
AAA_19
ATPase_2
T2SSE
AAA_7
AAA_2
AAA_33
BrxC_BrxD
CbiG_mid
AAA_18
AAA_30
AAA_29
Motif
Other DBs
NCBI-ProteinID:
CBJ79564
UniProt:
D3UZ36
LinkDB
All DBs
Position
complement(425224..426801)
Genome browser
AA seq
525 aa
AA seq
DB search
MKRRVVIGILGTKLDRRGKKANRWTKWRPTIGMCQQAELPIDRLELLYQTNDYGLAQRVK
EDIAETSPKTKVVLQELKIEDAWDFEEVYTAQLDFAVRYPFDTENEEYLVHITTGTHVAQ
ICWFLLTEARYLPAQLLQTSPRNGDRESHPEGNYTIIDLNLSRYTTLTSRFLHEQQEQVA
FLKSGIATRNANFNRLIDQVERVALRSSAPILLTGPTGAGKSFLARRIYQLRQSRHLIQG
RFVEVNCATLRGDNAMSTLFGHVKGAFTGAIQPRTGLLREADGGILFLDEVAELGLDEQA
MLLKAIEEKSFLPYGSDKEVHSNFQLIAGTHRDLHTWVVQGKFREDLYARINMWTYQLPG
LAQRREDIEPNIEYELARYAQMQQTQVRFDKEARLIYLHFACSEQAQWRGNFRELGASVT
RMATFAENGRINQHLVEEEITRLKQNWQDNGLSSLLPNHLPEVDLFDRQQLETVIKICRE
SASLSEAGRKLFAVSRQQKKQPNDADRLRKYLARFGLGWDSIQND
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcagagttgtcattgggattttgggtacgaagttggatagacggggcaaaaag
gccaatcgctggacaaaatggcgccctacgattggtatgtgccagcaagcggagttgccg
attgacaggctggaactactctaccaaaccaatgattatggtttagcacaaagagtgaag
gaggatatcgcagagacttcgccaaaaacgaaagtggttttgcaagagctcaaaattgaa
gacgcgtgggattttgaagaagtctataccgctcagcttgattttgccgtgcgttatcct
tttgatactgaaaatgaagaatatctggtacatatcacaacaggcacacacgtcgcccaa
atttgctggtttttgctgaccgaagcccgttacctgcccgcccagttgctccagacttcc
cctagaaatggcgatcgtgagagccatcctgaaggcaactacaccattatcgatttgaat
ctcagccgctataccaccctgaccagccgttttttgcatgaacagcaggaacaggtcgca
tttctgaaatcgggtatcgccacgcgcaatgctaattttaaccgcttgatcgaccaagtt
gaacgtgtcgccttgcgttcttccgccccaattttgctgacggggccaacaggtgcaggt
aagtcttttctggctcgccggatctatcagttgcggcaatcccgccatttgattcaaggc
cgttttgtggaagtaaactgcgcgaccctgcgcggtgataatgcaatgtccacactattt
ggtcatgttaaaggagcgtttacgggtgccattcagccgcgtacagggctactgcgtgaa
gccgatggcggcattttgtttcttgacgaagtggcagaactggggttggatgagcaggct
atgctgctaaaggctattgaagagaaaagcttcctgccttatggttctgataaagaagtt
cacagtaattttcagttaattgccggtactcaccgcgatctgcacacttgggtggtacaa
gggaaattccgtgaagatctgtacgcccgtatcaatatgtggacttaccaactccccggt
ctggcgcagcgtcgtgaagatattgagccgaacattgagtatgaacttgcccgatatgca
cagatgcagcagacacaggttcgcttcgataaggaagcgcgactgatttacctgcatttt
gcctgttcagaacaggcgcaatggcggggcaacttccgtgagttaggcgcatccgtcaca
cgtatggcaacattcgccgaaaacggacgcatcaatcagcatttggttgaagaggaaatt
acgcggctcaaacagaattggcaggataatgggctttcttccctgctgccgaatcatttg
ccggaagttgatctgtttgaccgccaacagttggaaacggtcattaaaatctgccgtgag
tctgccagtttatccgaagcgggccgcaagctgttcgccgtttcccgccaacaaaagaag
cagcccaatgatgccgataggttacgcaagtaccttgcccgattcggtctgggctgggat
agcattcaaaatgattag
DBGET
integrated database retrieval system
