Xenorhabdus bovienii SS-2004: XBJ1_0604
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Entry
XBJ1_0604 CDS
T01186
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
xbo
Xenorhabdus bovienii SS-2004
Pathway
xbo03030
DNA replication
xbo03430
Mismatch repair
xbo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xbo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
XBJ1_0604 (dnaE)
03430 Mismatch repair
XBJ1_0604 (dnaE)
03440 Homologous recombination
XBJ1_0604 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xbo03032
]
XBJ1_0604 (dnaE)
03400 DNA repair and recombination proteins [BR:
xbo03400
]
XBJ1_0604 (dnaE)
Enzymes [BR:
xbo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
XBJ1_0604 (dnaE)
DNA replication proteins [BR:
xbo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
XBJ1_0604 (dnaE)
DNA repair and recombination proteins [BR:
xbo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
XBJ1_0604 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
MJ0607
Motif
Other DBs
NCBI-ProteinID:
CBJ79748
UniProt:
D3UWH4
LinkDB
All DBs
Position
621716..625150
Genome browser
AA seq
1144 aa
AA seq
DB search
MIDGLAKTGSLIKKVAKLDMPAFAITDFTNLCGLVKFYGSAHSAGIKPIIGADFYVESDL
LGDEYAHLTILARNNEGYQNLTFLISEAYQKGYGAIGPTIKQEWLIKYKAGLILLSGGRM
GDVGKFLLRGNRAMADQCLDFYQEHFPDSYYLELIRTGRQDEENYLHAAVEVAAEKNLPV
VATNDVCFLESDDFEAHEIRVAIHDGYTMADPKRPKNYSPQQYLRSEQEMCELFSDIPEA
LQNSVEIAKRCNVTIRLGEYFLPQFPTGDMSTEDYLVEKSKQGLEDRLNFLYPDPQIRAE
KRSEYDERLDIELEVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKI
TDIDPLAFDLLFERFLNPERISMPDFDVDFCMEKRDQVIDHVADMYGRDAVSQIITFGTM
AAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLEKAFAAEPQLPEIYEADEEVRVLID
MARKLEGVTRNAGKHAGGVVIAPTKITDFSPIYCDPEGLNPVTQFDKNDVEYAGLVKFDF
LGLRTLTIINWALDMVNARRTHKNLEPIDITAIPLDDQISFDMLQRSETTAVFQLESRGM
KDLIKRLRPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREELSYPDVEWQHESLKPV
LEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKQPEEMAKQRSVFEEGAISQGI
NGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEK
VVGLVDECWRMGLKVLPPDINSGLYHFHVNDESEIVYGIGAIKGVGEGPIEAILEARQKE
GHFKELFDLCARVDTKKLNRRVMEKLIMSGAFDRLGPHRAALMSSLEDALKAADQHAKAE
AIGQTDMFGVLAEKPEQVELSYASTPKWPEQVVLDGERETLGLYLTGHPITSYLKEIERY
TNGLRLKDVSPTPRGQVTTVVGLVLASKILTTKRGNRIGICTLDDRSGRLEIMLFSDALE
RYQHLLEQDKILIATGQVSFDDFSGGLKMTVRELMDISEAREKFARGIAISLSDRQINKQ
LFNRLRGVLEPHRSGTIPVHLYYQRVDARARLRFGATWRVTPTDTLLTDLRTLLGNEQVE
LEFD
NT seq
3435 nt
NT seq
+upstream
nt +downstream
nt
atgattgacggtttagccaaaacagggtcactgataaaaaaagtggctaaattggatatg
cctgcttttgcgatcactgattttactaacctgtgcggcttggtgaaattctatggcagt
gcccatagtgcaggtatcaagccgattataggcgctgatttttatgtggaaagtgatctg
ctgggggatgaatatgcccatctgacgatccttgcccgtaataacgaaggttatcaaaac
ctaacctttttgatctccgaagcttatcagaaaggctatggtgcgattggtccgacgatc
aaacaagaatggctgataaaatacaaagccggcttgattcttctgtctggtgggcgaatg
ggggatgtcggcaaattcttactgcgcggaaatcgggcgatggcggatcagtgcctcgat
ttctatcaggaacattttccggacagctattaccttgaattgatccgtacaggacgtcaa
gacgaagaaaattatcttcatgctgccgtcgaagtggcagcagaaaaaaacttacctgtt
gtggcaactaatgacgtttgtttcctggaaagtgacgactttgaagcccatgagattcgg
gttgccattcatgatggctatacgatggctgatccaaaacgccctaaaaactatagccct
cagcagtatctgcgcagtgaacaggagatgtgtgagctattctctgacattcctgaagcg
ctgcaaaatagtgtcgaaattgctaaacgctgcaatgtgactattcgtctcggtgaatat
ttcctgccacagtttccaacaggggatatgagcactgaagactatctggttgaaaagtcg
aagcaaggcctggaagatcgtctgaattttctctatcccgatccgcaaatcagagcggaa
aaacgttccgaatacgatgagcgtctggatatagagctggaagttatcaaccaaatgggc
ttccccggctattttctgatcgtgatggaatttatccaatggtcgaaagataatggcgta
cccgtagggccggggcgtggttccggtgcgggttcccttgtcgcctacgccttgaaaatt
accgatattgacccgttggcatttgacttgctgttcgaacgtttcctcaaccctgaacgt
atttcgatgcctgactttgacgtcgatttctgtatggaaaaacgtgatcaggtgattgac
cacgttgcggatatgtacgggcgggatgcggtatcgcagatcatcactttcggtacgatg
gcggcaaaagccgttattcgtgacgttgggcgtgtattggggcacccatatggctttgtt
gatcgaatatcgaaactagtgcctcctgatcctggcatgacgttggaaaaggcatttgcg
gctgaacctcaattgcctgaaatttacgaggcggatgaagaagtcagggtgctgattgac
atggctcgcaaattggaaggtgtcacccgtaacgccggtaaacatgcgggtggtgtggtc
attgccccgaccaagatcactgatttttcaccgatttactgtgatccggaaggcctgaac
cccgtcactcagtttgataagaacgatgtggaatatgcgggtctggtgaagtttgacttc
cttggcctgagaaccttgaccattatcaactgggcgcttgatatggtgaacgcccgtcgt
actcataaaaatctggaaccgattgatattacggcaattccgctggatgaccagataagt
ttcgatatgctgcaacgctctgaaactacggcggtgttccaacttgaatcccgtgggatg
aaagatctgatcaaacgcctgcgtcccgactgtttcgaagatatgatcgcattagtggcg
ctgttccgtccggggccattacaatccggtatggtggataactttatcgaccgtaaacac
gggcgggaagagctttcatacccagatgttgagtggcagcacgaatccttgaagcccgta
ctggagccaacatacggtattattctgtatcaggaacaggtgatgcagattgctcaggtg
ctggcaggttataccctcggtggtgcagatatgctccgtcgcgcaatgggtaagaagcag
ccggaagagatggctaaacagcgctcggtatttgaagagggcgcgataagccaaggtatt
aatggcgaactcgccataaaaatcttcgatttggtggaaaaattcgcgggttatggtttc
aacaaatctcactctgctgcctatgcgttagtttcttatcaaaccttatggttaaaagct
cattatccggcagaatttatggcggccgtgatgacggcggatatggataacacagaaaaa
gtcgttgggctggtggatgaatgctggcgcatggggcttaaggttttaccaccggatatc
aacagtggtctgtatcatttccatgtcaatgacgaaagcgaaattgtttacggcattggt
gcgattaaaggtgtgggtgaagggccgattgaagcaatcctcgaagcacgtcaaaaagag
gggcatttcaaagaactgtttgatctgtgtgcgcgtgttgataccaaaaagctgaaccgt
cgtgtgatggaaaagctgattatgtcaggagcgtttgacaggctgggaccacatcgtgcg
gccttgatgtcttcgttggaagacgcgttgaaagcggctgatcaacatgctaaagcagaa
gccattggccagacagatatgtttggtgtgctggctgaaaaaccagagcaggttgagctt
tcatatgccagtacaccgaaatggccagaacaagtcgtgttagatggtgagagggaaacg
ctggggttgtatttaacgggtcacccgatcacaagttatttgaaagagattgaacgatat
acgaatggattgcgtctaaaagatgtgagcccgacacctcgtggtcaagtcacgactgtg
gtaggtttggtgctggcatccaaaatcttgacaaccaaacgaggcaatcggattggcatc
tgtactttggatgatcgttcaggacggctggaaatcatgctgttttctgatgcactggaa
aggtatcagcatttattggaacaggacaaaattttaattgctaccgggcaagtcagcttt
gatgacttcagcggcggccttaaaatgacagtccgtgaattaatggatatcagtgaggcg
cgtgaaaaatttgcacgcgggatagctatctcgttatcagacaggcaaattaataaacaa
ttatttaatcgtctccgtggcgtattggagccgcatcgttcaggtacgataccagttcat
ctttattaccagcgggtagatgcccgtgcccgtttacgattcggtgcaacatggcgggta
acgccgacggatacccttttgacagatctgcgaactctgctgggtaacgagcaggtagaa
ttagaatttgactaa
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integrated database retrieval system
